myRT

myRT report for GCA_003163115.1_20120800_S3D

Download annotations/find similar RTs

Seq: PLVH01000393.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1474 73.20120800_S3D.12_contig_1771, whole genome shotgun sequence (14345 bp)
Overview 1 RT 1: 11766-13690 bp Neighborhood of RT #1 [11766, 13926] KdpC RVT-GII GIIM Feature: gene Location: 11766-12389 bp Feature: domain Description: KdpC Location: 11784-12339 bp Feature: domain Description: KdpC Location: 1 1 784-1 2339 bp Feature: gene Location: 12836-13006 bp Feature: gene Location: 13042-13926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13048-13402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3048-1 3402 bp Feature: domain Description: GIIM Note: maturase Location: 13462-13690 bp Feature: domain Description: GIIM Note: maturase Location: 1 3462-1 3690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KdpC (pfam02669), RVT-GII, GIIM (pfam08388)

Seq: PLVH01000232.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1474 73.20120800_S3D.12_contig_5307, whole genome shotgun sequence (10772 bp)
Overview 1 RT 1: 2-4779 bp Neighborhood of RT #1 [2, 4779] TrwC PRK13709 RVT_N RVT-GII GIIM HTH_XRE Feature: gene Location: 2-1684 bp Feature: domain Description: TrwC Location: 38-905 bp Feature: domain Description: TrwC Location: 38-905 bp Feature: domain Description: PRK13709 Location: 1187-1655 bp Feature: domain Description: PRK13709 Location: 1187-1655 bp Feature: gene Location: 1997-2269 bp Feature: gene Location: 2354-3862 bp Feature: RT Description: RVT_N Location: 2405-2648 bp Feature: RT Description: RVT_N Location: 2 405-2 648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2693-3338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 693-3338 bp Feature: domain Description: GIIM Note: maturase Location: 3398-3626 bp Feature: domain Description: GIIM Note: maturase Location: 3398-362 6 bp Feature: gene Location: 3993-4394 bp Feature: domain Description: HTH_XRE Location: 4218-4380 bp Feature: domain Description: HTH_XRE Location: 42 18-4380 bp Feature: gene Location: 4426-4779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrwC (pfam08751), PRK13709 (conjugal transfer nickase/helicase TraI; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: PLVH01000267.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1474 73.20120800_S3D.12_contig_7471, whole genome shotgun sequence (11619 bp)
Overview 1 RT 1: 9307-11251 bp Neighborhood of RT #1 [9307, 11487] RVT_N RVT-GII GIIM Feature: gene Location: 9307-9591 bp Feature: gene Location: 9685-9933 bp Feature: gene Location: 9979-11487 bp Feature: RT Description: RVT_N Location: 10030-10273 bp Feature: RT Description: RVT_N Location: 1003 0-10273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10318-10963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 18-10963 bp Feature: domain Description: GIIM Note: maturase Location: 11020-11251 bp Feature: domain Description: GIIM Note: maturase Location: 11020-11251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)