myRT

myRT report for GCA_003163195.1_20120800_S2X

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Seq: PLVN01000225.1 Acidobacteriaceae bacterium isolate bog_435 73.20120800_S2X.18_contig_1255, whole genome shotgun sequence (25731 bp)
Overview 1 RT 1: 21484-25726 bp Neighborhood of RT #1 [21484, 25728] RVT-GII HTH_17 Feature: gene Location: 21484-21936 bp Feature: gene Location: 21994-22281 bp Feature: gene Location: 22607-24082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23021-23711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23021 -2371 1 bp Feature: gene Location: 24192-25343 bp Feature: gene Location: 25531-25728 bp Feature: domain Description: HTH_17 Location: 25627-25726 bp Feature: domain Description: HTH_1 7 Location: 25627-25726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_17 (pfam12728)

Seq: PLVN01000086.1 Acidobacteriaceae bacterium isolate bog_435 73.20120800_S2X.18_contig_341, whole genome shotgun sequence (41707 bp)
Overview 1 RT 1: 35151-41549 bp Neighborhood of RT #1 [35151, 41704] He_PIG He_PIG RVT-GII GIIM PL-6 PL-6 Feature: gene Location: 35151-37826 bp Feature: domain Description: He_PIG Location: 35430-35544 bp Feature: domain Description: He_PIG Location: 35430-35544 bp Feature: domain Description: He_PIG Location: 35991-36081 bp Feature: domain Description: He_PIG Location: 35991-36081 bp Feature: gene Location: 37831-38244 bp Feature: gene Location: 38305-39186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38647-39181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38647-39181 bp Feature: gene Location: 39223-39687 bp Feature: domain Description: GIIM Note: maturase Location: 39313-39538 bp Feature: domain Description: GIIM Note: maturase Location: 39313-39538 bp Feature: gene Location: 40661-41704 bp Feature: domain Description: PL-6 Location: 40853-41003 bp Feature: domain Description: PL-6 Location: 40853-41003 bp Feature: domain Description: PL-6 Location: 41228-41549 bp Feature: domain Description: PL-6 Location: 412 2 8-41549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT He_PIG (pfam05345), RVT-GII, GIIM (pfam08388), PL-6 (cl19188)

Seq: PLVN01000272.1 Acidobacteriaceae bacterium isolate bog_435 73.20120800_S2X.18_contig_8030, whole genome shotgun sequence (9162 bp)
Overview 1 RT 1: 96-9161 bp Neighborhood of RT #1 [96, 9161] RVT-GII GIIM Cyt_bd_oxida_I Cyt_bd_oxida_I Cytochrome_CBB3 Cytochrome_CBB3 RVT-GII RVT-GII Feature: gene Location: 96-1394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387-987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 87-987 bp Feature: domain Description: GIIM Note: maturase Location: 1101-1311 bp Feature: domain Description: GIIM Note: maturase Location: 1101-13 11 bp Feature: gene Location: 1393-1551 bp Feature: gene Location: 1657-1908 bp Feature: gene Location: 3021-3329 bp Feature: gene Location: 3351-4850 bp Feature: domain Description: Cyt_bd_oxida_I Location: 3399-3957 bp Feature: domain Description: Cyt_bd_oxida_I Location: 3 3 99-3 957 bp Feature: domain Description: Cyt_bd_oxida_I Location: 4134-4314 bp Feature: domain Description: Cyt_bd_oxida_I Location: 413 4-43 14 bp Feature: domain Description: Cytochrome_CBB3 Location: 4404-4596 bp Feature: domain Description: Cytochrome_CBB3 Location: 4404-4596 bp Feature: domain Description: Cytochrome_CBB3 Location: 4641-4833 bp Feature: domain Description: Cytochrome_CBB3 Location: 4641-483 3 bp Feature: gene Location: 5339-6826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5831-6443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583 1-6443 bp Feature: gene Location: 6965-7237 bp Feature: gene Location: 7474-8796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7729-8422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7729-8422 bp Feature: gene Location: 8934-9161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Cyt_bd_oxida_I (pfam01654), Cytochrome_CBB3 (pfam13442)