myRT

myRT report for GCA_003163235.1_20120800_S2X

Download annotations/find similar RTs

Seq: PLVP01000402.1 Acidobacteriaceae bacterium isolate bog_434 73.20120800_S2X.13_contig_1622, whole genome shotgun sequence (9844 bp)
Overview 1 RT 1: 457-9412 bp Neighborhood of RT #1 [457, 9537] acidobact_VWFA ArabFuran-catal ArabFuran-catal NPCBM_assoc LTD RVT-GII Cupin_2 Feature: gene Location: 457-2580 bp Feature: domain Description: acidobact_VWFA Location: 835-1888 bp Feature: domain Description: acidobact_VWFA Location: 835-1 888 bp Feature: gene Location: 3207-6593 bp Feature: domain Description: ArabFuran-catal Location: 3333-4089 bp Feature: domain Description: ArabFuran-catal Location: 3333-4089 bp Feature: domain Description: ArabFuran-catal Location: 4089-4227 bp Feature: domain Description: ArabFuran-catal Location: 4089-4227 bp Feature: domain Description: NPCBM_assoc Location: 4293-4536 bp Feature: domain Description: NPCBM_assoc Location: 4293-4536 bp Feature: domain Description: LTD Location: 4593-4881 bp Feature: domain Description: LTD Location: 4593-4881 bp Feature: gene Location: 6722-7792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6737-7241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6737-7241 bp Feature: gene Location: 8030-8203 bp Feature: gene Location: 8938-9537 bp Feature: domain Description: Cupin_2 Location: 9235-9412 bp Feature: domain Description: Cupin_2 Location: 9235-941 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT acidobact_VWFA (TIGR03436), ArabFuran-catal (pfam09206), NPCBM_assoc (pfam10633), LTD (pfam00932), RVT-GII, Cupin_2 (pfam07883)

Seq: PLVP01000608.1 Acidobacteriaceae bacterium isolate bog_434 73.20120800_S2X.13_contig_18960, whole genome shotgun sequence (12148 bp)
Overview 1 RT 1: 74-2343 bp Neighborhood of RT #1 [74, 2343] RVT-Retrons Feature: gene Location: 74-1012 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 242-776 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 42 -776 bp Feature: gene Location: 1343-1558 bp Feature: gene Location: 2119-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PLVP01000060.1 Acidobacteriaceae bacterium isolate bog_434 73.20120800_S2X.13_contig_4029, whole genome shotgun sequence (3538 bp)
Overview 1 RT 1: 3-3492 bp Neighborhood of RT #1 [3, 3492] Zn_ribbon_recom RVT_N RVT-GII GIIM Feature: gene Location: 3-1331 bp Feature: domain Description: Zn_ribbon_recom Location: 192-360 bp Feature: domain Description: Zn_ribbon_recom Location: 192-3 60 bp Feature: gene Location: 1595-3079 bp Feature: domain Description: RVT_N Location: 1646-1889 bp Feature: domain Description: RVT_N Location: 1646-1889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1934-2579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 4-2579 bp Feature: domain Description: GIIM Note: maturase Location: 2636-2867 bp Feature: domain Description: GIIM Note: maturase Location: 263 6-2867 bp Feature: gene Location: 3091-3291 bp Feature: gene Location: 3355-3492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_ribbon_recom (pfam13408), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PLVP01000115.1 Acidobacteriaceae bacterium isolate bog_434 73.20120800_S2X.13_contig_541, whole genome shotgun sequence (39093 bp)
Overview 1 RT 1: 19171-24133 bp 2 RT 2: 31733-36125 bp Neighborhood of RT #1 [19171, 24174] HipB RVT-Retrons DNA_polB_like1_exo TraI_TIGR TraI_TIGR TraI_TIGR TraI_TIGR Neighborhood of RT #2 [31733, 36163] RVT-GII RVT-GII VirB10 Feature: gene Location: 19171-19425 bp Feature: gene Location: 19456-19767 bp Feature: domain Description: HipB Location: 19465-19669 bp Feature: domain Description: HipB Location: 194 65-19669 bp Feature: gene Location: 19751-20656 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19892-20414 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19892-204 14 bp Feature: gene Location: 20653-21324 bp Feature: domain Description: DNA_polB_like1_exo Location: 20701-21196 bp Feature: domain Description: DNA_polB_like1_exo Location: 20701-21196 bp Feature: gene Location: 21460-24174 bp Feature: domain Description: TraI_TIGR Location: 21463-22411 bp Feature: domain Description: TraI_TIGR Location: 214 63-224 11 bp Feature: domain Description: TraI_TIGR Location: 22441-23323 bp Feature: domain Description: TraI_TIGR Location: 224 4 1-23323 bp Feature: domain Description: TraI_TIGR Location: 23335-23578 bp Feature: domain Description: TraI_TIGR Location: 23335-23578 bp Feature: domain Description: TraI_TIGR Location: 23605-24133 bp Feature: domain Description: TraI_TIGR Location: 23605-24 133 bp Feature: gene Location: 31733-32602 bp Feature: gene Location: 32646-32999 bp Feature: gene Location: 32996-33856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33410-33752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334 10-33752 bp Feature: gene Location: 33831-34442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33840-34050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3384 0-34 050 bp Feature: gene Location: 34515-34805 bp Feature: gene Location: 34817-36163 bp Feature: domain Description: VirB10 Location: 35585-36125 bp Feature: domain Description: VirB10 Location: 35585-36125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-Retrons, DNA_polB_like1_exo (cd05782), TraI_TIGR (TIGR02760), RVT-GII, VirB10 (COG2948)

Seq: PLVP01000320.1 Acidobacteriaceae bacterium isolate bog_434 73.20120800_S2X.13_contig_6416, whole genome shotgun sequence (15796 bp)
Overview 1 RT 1: 12108-15791 bp Neighborhood of RT #1 [12108, 15793] CarboxypepD_reg GT4_mannosyltransferase-like RVT-GII Feature: gene Location: 12108-13202 bp Feature: domain Description: CarboxypepD_reg Location: 12282-12510 bp Feature: domain Description: CarboxypepD_reg Location: 12282-125 10 bp Feature: gene Location: 13330-14667 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 13462-14572 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 13462-145 72 bp Feature: gene Location: 15011-15793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15506-15791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 5 06-15 791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CarboxypepD_reg (pfam13620), GT4_mannosyltransferase-like (cd03822), RVT-GII

Seq: PLVP01000059.1 Acidobacteriaceae bacterium isolate bog_434 73.20120800_S2X.13_contig_6867, whole genome shotgun sequence (20829 bp)
Overview 1 RT 1: 1105-4263 bp Neighborhood of RT #1 [1105, 4328] DGQHR RVT-GII GIIM HTH_Tnp_1 TnpB_IS66 Feature: gene Location: 1105-1566 bp Feature: domain Description: DGQHR Location: 1114-1342 bp Feature: domain Description: DGQHR Location: 1114-1342 bp Feature: gene Location: 1818-1982 bp Feature: gene Location: 2066-3433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2399-3014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2399-3014 bp Feature: domain Description: GIIM Note: maturase Location: 3071-3275 bp Feature: domain Description: GIIM Note: maturase Location: 3071-3275 bp Feature: gene Location: 3583-3918 bp Feature: domain Description: HTH_Tnp_1 Location: 3643-3745 bp Feature: domain Description: HTH_Tnp_1 Location: 36 43-3745 bp Feature: gene Location: 3915-4328 bp Feature: domain Description: TnpB_IS66 Location: 3966-4263 bp Feature: domain Description: TnpB_IS6 6 Location: 396 6 -426 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DGQHR (TIGR03187), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), TnpB_IS66 (pfam05717)

Seq: PLVP01000268.1 Acidobacteriaceae bacterium isolate bog_434 73.20120800_S2X.13_contig_855, whole genome shotgun sequence (36129 bp)
Overview 1 RT 1: 12901-21429 bp Neighborhood of RT #1 [12901, 21429] ADOP RVT-GII Pro-peptidase_S53 Peptidases_S53 Big_3_5 Big_3_5 Big_3_5 Feature: gene Location: 12901-13068 bp Feature: gene Location: 13282-15711 bp Feature: domain Description: ADOP Location: 13294-15709 bp Feature: domain Description: ADOP Location: 13294-157 09 bp Feature: gene Location: 15989-16369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16253-16346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16253-16346 bp Feature: gene Location: 16615-20376 bp Feature: domain Description: Pro-peptidase_S53 Location: 16981-17344 bp Feature: domain Description: Pro-peptidase_S53 Location: 16981-17 344 bp Feature: domain Description: Peptidases_S53 Location: 17437-18799 bp Feature: domain Description: Peptidases_S53 Location: 17 437 -187 99 bp Feature: domain Description: Big_3_5 Location: 18880-19177 bp Feature: domain Description: Big_3_5 Location: 18880-1917 7 bp Feature: domain Description: Big_3_5 Location: 19210-19492 bp Feature: domain Description: Big_3_5 Location: 19210-19492 bp Feature: domain Description: Big_3_5 Location: 19585-19816 bp Feature: domain Description: Big_3_5 Location: 19585-19816 bp Feature: gene Location: 20815-21429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ADOP (TIGR03434), RVT-GII, Pro-peptidase_S53 (cl07889), Peptidases_S53 (cd04056), Big_3_5 (pfam16640)