myRT

myRT report for GCA_003163315.1_20120800_S2M

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Seq: PLVU01000200.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1473 73.20120800_S2M.9_contig_13754, whole genome shotgun sequence (15964 bp)
Overview 1 RT 1: 13543-15818 bp Neighborhood of RT #1 [13543, 15818] KdpC RVT-GII GIIM Feature: gene Location: 13543-13878 bp Feature: domain Description: KdpC Location: 13552-13828 bp Feature: domain Description: KdpC Location: 1 3552-1 3828 bp Feature: gene Location: 14330-14500 bp Feature: gene Location: 14536-15420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14542-14896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4542-1 4896 bp Feature: domain Description: GIIM Note: maturase Location: 14956-15184 bp Feature: domain Description: GIIM Note: maturase Location: 1 4956-1 51 84 bp Feature: gene Location: 15687-15818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KdpC (pfam02669), RVT-GII, GIIM (pfam08388)

Seq: PLVU01000137.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1473 73.20120800_S2M.9_contig_8371, whole genome shotgun sequence (20336 bp)
Overview 1 RT 1: 16869-19911 bp Neighborhood of RT #1 [16869, 19911] HTH_XRE RVT_N RVT-GII GIIM Feature: gene Location: 16869-17054 bp Feature: gene Location: 17086-17487 bp Feature: domain Description: HTH_XRE Location: 17311-17473 bp Feature: domain Description: HTH_XRE Location: 17311-17473 bp Feature: gene Location: 17618-19126 bp Feature: RT Description: RVT_N Location: 17669-17912 bp Feature: RT Description: RVT_N Location: 17669-17912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17957-18602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17957-18602 bp Feature: domain Description: GIIM Note: maturase Location: 18662-18890 bp Feature: domain Description: GIIM Note: maturase Location: 18662 -18890 bp Feature: gene Location: 19211-19483 bp Feature: gene Location: 19726-19911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)