myRT

myRT report for GCA_003163555.1_20120800_S3D

Download annotations/find similar RTs

Seq: PLVF01000097.1 Methylocystaceae bacterium isolate bog_941 73.20120800_S3D.23_contig_10211, whole genome shotgun sequence (3050 bp)
Overview 1 RT 1: 307-2680 bp Neighborhood of RT #1 [307, 2694] InsE RVT-GII LomR DDE_Tnp_1_2 Feature: gene Location: 307-675 bp Feature: domain Description: InsE Location: 340-529 bp Feature: domain Description: InsE Location: 340-529 bp Feature: gene Location: 739-915 bp Feature: gene Location: 1071-1316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1077-1164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 077-1 1 64 bp Feature: gene Location: 1456-2268 bp Feature: domain Description: LomR Location: 1471-2218 bp Feature: domain Description: LomR Location: 1 471 -221 8 bp Feature: gene Location: 2494-2694 bp Feature: domain Description: DDE_Tnp_1_2 Location: 2521-2680 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 2521 -2680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, LomR (COG3637), DDE_Tnp_1_2 (pfam13586)

Seq: PLVF01000443.1 Methylocystaceae bacterium isolate bog_941 73.20120800_S3D.23_contig_2992, whole genome shotgun sequence (14210 bp)
Overview 1 RT 1: 2651-5013 bp Neighborhood of RT #1 [2651, 5111] fixJ RVT-GII Rep_3 PHA02518 Feature: gene Location: 2651-2875 bp Feature: gene Location: 2961-3362 bp Feature: domain Description: fixJ Location: 2973-3345 bp Feature: domain Description: fixJ Location: 2 973-3345 bp Feature: gene Location: 3402-3701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3489-3663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3489-3663 bp Feature: gene Location: 3705-4358 bp Feature: domain Description: Rep_3 Location: 3711-3984 bp Feature: domain Description: Rep_3 Location: 3711-3984 bp Feature: gene Location: 4461-5111 bp Feature: domain Description: PHA02518 Location: 4470-5013 bp Feature: domain Description: PHA02 518 Location: 4470-5013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fixJ (PRK09390), RVT-GII, Rep_3 (pfam01051), PHA02518 (ParA-like protein; Provisional)

Seq: PLVF01000063.1 Methylocystaceae bacterium isolate bog_941 73.20120800_S3D.23_contig_3890, whole genome shotgun sequence (9211 bp)
Overview 1 RT 1: 5823-9205 bp Neighborhood of RT #1 [5823, 9210] zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII PRK08181 Feature: gene Location: 5823-6911 bp Feature: domain Description: zf-ISL3 Location: 5829-5955 bp Feature: domain Description: zf-ISL3 Location: 5829-5955 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 5976-6099 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 5976-6099 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 6165-6885 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 6165-6885 bp Feature: gene Location: 6964-7158 bp Feature: gene Location: 7379-8506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7676-8366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7676-83 66 bp Feature: gene Location: 8585-8914 bp Feature: gene Location: 9082-9210 bp Feature: domain Description: PRK08181 Location: 9085-9205 bp Feature: domain Description: PRK08181 Location: 9085-9205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-GII, PRK08181 (transposase; Validated)

Seq: PLVF01000337.1 Methylocystaceae bacterium isolate bog_941 73.20120800_S3D.23_contig_851, whole genome shotgun sequence (5363 bp)
Overview 1 RT 1: 22-2777 bp Neighborhood of RT #1 [22, 2777] RVT-GII LysR Feature: gene Location: 22-744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34-364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 -364 bp Feature: gene Location: 1057-2106 bp Feature: domain Description: LysR Location: 1102-1951 bp Feature: domain Description: LysR Location: 1102-1951 bp Feature: gene Location: 2199-2777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LysR (COG0583)