myRT

myRT report for GCA_003163855.1_20120700_S1S

Download annotations/find similar RTs

Seq: PLRJ01000116.1 Bryobacterales bacterium isolate bog_377 73.20120700_S1S.22_contig_14916, whole genome shotgun sequence (9523 bp)
Overview 1 RT 1: 3860-8101 bp Neighborhood of RT #1 [3860, 8163] group_II_RT_mat RVT-GII RHS_repeat YD_repeat_2x Rhs_assc_core CarboxypepD_reg Feature: gene Location: 3860-4246 bp Feature: gene Location: 4501-5163 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4846-5065 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4846-5065 bp Feature: gene Location: 5076-6122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5082-5691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5082-5691 bp Feature: gene Location: 6119-7750 bp Feature: domain Description: RHS_repeat Location: 6332-6401 bp Feature: domain Description: RHS_repeat Location: 6332-6401 bp Feature: domain Description: YD_repeat_2x Location: 6593-6677 bp Feature: domain Description: YD_repeat_2x Location: 6593-6677 bp Feature: domain Description: Rhs_assc_core Location: 6854-7133 bp Feature: domain Description: Rhs_assc_core Location: 6854-71 33 bp Feature: gene Location: 7750-8163 bp Feature: domain Description: CarboxypepD_reg Location: 7891-8101 bp Feature: domain Description: CarboxypepD_reg Location: 7891 -81 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, RHS_repeat (pfam05593), YD_repeat_2x (TIGR01643), Rhs_assc_core (TIGR03696), CarboxypepD_reg (pfam13620)

Seq: PLRJ01000052.1 Bryobacterales bacterium isolate bog_377 73.20120700_S1S.22_contig_1765, whole genome shotgun sequence (14093 bp)
Overview 1 RT 1: 8863-13651 bp Neighborhood of RT #1 [8863, 13668] TIR_2 WD40 WD40 RVT-GII COG2442 Feature: gene Location: 8863-9123 bp Feature: domain Description: TIR_2 Location: 8914-8980 bp Feature: domain Description: TIR_2 Location: 8914-8980 bp Feature: gene Location: 9232-10773 bp Feature: domain Description: WD40 Location: 9673-10054 bp Feature: domain Description: WD40 Location: 9673-10054 bp Feature: domain Description: WD40 Location: 10099-10663 bp Feature: domain Description: WD40 Location: 10099-10663 bp Feature: gene Location: 11119-12795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11611-12301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11611-12 301 bp Feature: gene Location: 12986-13309 bp Feature: gene Location: 13402-13668 bp Feature: domain Description: COG2442 Location: 13456-13651 bp Feature: domain Description: COG2 442 Location: 13456-13651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG2442 (Uncharacterized conserved protein, DUF433 family ), TIR_2 (pfam13676), WD40 (smart00320)

Seq: PLRJ01000036.1 Bryobacterales bacterium isolate bog_377 73.20120700_S1S.22_contig_34879, whole genome shotgun sequence (10674 bp)
Overview 1 RT 1: 467-5306 bp Neighborhood of RT #1 [467, 5306] COG5635 COG5635 FGE-sulfatase RVT-DGRs YfmG Feature: gene Location: 467-3160 bp Feature: domain Description: COG5635 Location: 983-1457 bp Feature: domain Description: COG563 5 Location: 983 -1457 bp Feature: domain Description: COG5635 Location: 1667-1805 bp Feature: domain Description: COG563 5 Location: 1667-1805 bp Feature: domain Description: FGE-sulfatase Location: 2495-3119 bp Feature: domain Description: FGE-sulfatase Location: 2495-3 119 bp Feature: gene Location: 3220-4263 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3412-4060 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 412-4060 bp Feature: gene Location: 4488-4943 bp Feature: domain Description: YfmG Location: 4494-4611 bp Feature: domain Description: YfmG Location: 4494-4611 bp Feature: gene Location: 5109-5306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, YfmG (COG1262), COG5635 (Predicted NTPase, NACHT family domain ), FGE-sulfatase (pfam03781)

Seq: PLRJ01000068.1 Bryobacterales bacterium isolate bog_377 73.20120700_S1S.22_contig_75, whole genome shotgun sequence (99011 bp)
Overview 1 RT 1: 71206-74724 bp Neighborhood of RT #1 [71206, 74810] DUF433 Acetyltransf_10 RVT-Retrons SPFH_eoslipins_u1 Feature: gene Location: 71206-71415 bp Feature: domain Description: DUF433 Location: 71224-71383 bp Feature: domain Description: DUF4 33 Location: 71224 -71383 bp Feature: gene Location: 71431-72042 bp Feature: domain Description: Acetyltransf_10 Location: 71731-71995 bp Feature: domain Description: Acetyltransf_10 Location: 71731-71995 bp Feature: gene Location: 72121-73440 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72568-73210 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72568-73210 bp Feature: gene Location: 73301-73819 bp Feature: gene Location: 74028-74810 bp Feature: domain Description: SPFH_eoslipins_u1 Location: 74199-74724 bp Feature: domain Description: SPFH_eoslipins_u1 Location: 74 199-74 724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF433 (pfam04255), Acetyltransf_10 (pfam13673), RVT-Retrons, SPFH_eoslipins_u1 (cd08826)