myRT

myRT report for GCA_003164335.1_20120700_S1D

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Seq: PLTF01000029.1 Fibrobacteres bacterium isolate bog_1184 73.20120700_S1D.234_contig_126739, whole genome shotgun sequence (60182 bp)
Overview 1 RT 1: 3444-16289 bp Neighborhood of RT #1 [3444, 16289] PLDc_N_Snf2_like DEXDc_RapA DEXDc_RapA SF2_C_SNF met_A_Alw26 Eco57I met_A_Alw26 RVT-UG5 Feature: gene Location: 3444-6866 bp Feature: domain Description: PLDc_N_Snf2_like Location: 3456-4032 bp Feature: domain Description: PLDc_N_Snf2_like Location: 3456-4032 bp Feature: domain Description: DEXDc_RapA Location: 4224-4458 bp Feature: domain Description: DEXDc_RapA Location: 4224-4458 bp Feature: domain Description: DEXDc_RapA Location: 4476-4707 bp Feature: domain Description: DEXDc_RapA Location: 4476-4707 bp Feature: domain Description: SF2_C_SNF Location: 5541-5985 bp Feature: domain Description: SF2_C_SNF Location: 5541 -5985 bp Feature: gene Location: 6879-10142 bp Feature: domain Description: met_A_Alw26 Location: 8418-8496 bp Feature: domain Description: met_A_Alw26 Location: 841 8-8496 bp Feature: domain Description: Eco57I Location: 9138-9378 bp Feature: domain Description: Eco57I Location: 91 38-9378 bp Feature: domain Description: met_A_Alw26 Location: 9714-10092 bp Feature: domain Description: met_A_Alw26 Location: 971 4-1 0092 bp Feature: gene Location: 10139-12955 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10607-11108 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 0607-1 1 1 08 bp Feature: gene Location: 13007-13480 bp Feature: gene Location: 13542-16289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_N_Snf2_like (cd09178), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793), met_A_Alw26 (TIGR02987), Eco57I (pfam07669), RVT-UG5

Seq: PLTF01000024.1 Fibrobacteres bacterium isolate bog_1184 73.20120700_S1D.234_contig_181458, whole genome shotgun sequence (10447 bp)
Overview 1 RT 1: 5501-9957 bp Neighborhood of RT #1 [5501, 9968] PMT_2 TPR TPR RVT-DGRs Avd_like YfmG Feature: gene Location: 5501-7330 bp Feature: domain Description: PMT_2 Location: 5864-6287 bp Feature: domain Description: PMT_2 Location: 5864-62 87 bp Feature: domain Description: TPR Location: 6830-7022 bp Feature: domain Description: TPR Location: 6830-702 2 bp Feature: domain Description: TPR Location: 7046-7289 bp Feature: domain Description: TPR Location: 7046-72 89 bp Feature: gene Location: 7191-7466 bp Feature: gene Location: 7702-8709 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7969-8281 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7969-82 81 bp Feature: gene Location: 8639-8980 bp Feature: domain Description: Avd_like Location: 8663-8972 bp Feature: domain Description: Avd_like Location: 8663-8972 bp Feature: gene Location: 9075-9968 bp Feature: domain Description: YfmG Location: 9180-9957 bp Feature: domain Description: YfmG Location: 9180-9957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PMT_2 (pfam13231), TPR (smart00028), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: PLTF01000088.1 Fibrobacteres bacterium isolate bog_1184 73.20120700_S1D.234_contig_3090, whole genome shotgun sequence (77479 bp)
Overview 1 RT 1: 38-8964 bp Neighborhood of RT #1 [38, 9092] Avd_like RVT-DGRs DUF4372 DDE_Tnp_1 RVT-DGRs Avd_like FN3 pfam03781 Feature: gene Location: 38-379 bp Feature: domain Description: Avd_like Location: 62-371 bp Feature: domain Description: Avd_like Location: 62-3 71 bp Feature: gene Location: 309-1580 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 579-1224 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 579-1224 bp Feature: gene Location: 2126-2386 bp Feature: gene Location: 2438-2695 bp Feature: gene Location: 4251-4619 bp Feature: gene Location: 4718-5938 bp Feature: domain Description: DUF4372 Location: 4742-4940 bp Feature: domain Description: DUF43 72 Location: 4742-4940 bp Feature: domain Description: DDE_Tnp_1 Location: 5108-5750 bp Feature: domain Description: DDE_Tnp_1 Location: 5108-5750 bp Feature: gene Location: 6097-7335 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6343-6991 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63 43 -6991 bp Feature: gene Location: 7274-7621 bp Feature: domain Description: Avd_like Location: 7304-7607 bp Feature: domain Description: Avd_like Location: 73 04-7607 bp Feature: gene Location: 7632-9092 bp Feature: domain Description: FN3 Location: 7761-8025 bp Feature: domain Description: FN3 Location: 7761-8025 bp Feature: domain Description: pfam03781 Location: 8343-8964 bp Feature: domain Description: pfam03 781 Location: 83 43 -8964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), FN3 (smart00060), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: PLTF01000035.1 Fibrobacteres bacterium isolate bog_1184 73.20120700_S1D.234_contig_43207, whole genome shotgun sequence (49355 bp)
Overview 1 RT 1: 33073-38796 bp Neighborhood of RT #1 [33073, 38804] FN3 FN3 pfam03781 Avd_like RVT-DGRs DUF4372 DDE_Tnp_1 ZntC Feature: gene Location: 33073-34578 bp Feature: domain Description: FN3 Location: 33211-33460 bp Feature: domain Description: FN3 Location: 33211-334 60 bp Feature: domain Description: FN3 Location: 33553-33766 bp Feature: domain Description: FN3 Location: 33553-33766 bp Feature: domain Description: pfam03781 Location: 33796-34573 bp Feature: domain Description: pfam03781 Location: 33796-34 573 bp Feature: gene Location: 34667-35014 bp Feature: domain Description: Avd_like Location: 34697-35000 bp Feature: domain Description: Avd_like Location: 34 697-35000 bp Feature: gene Location: 35109-36191 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35199-35847 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35199-3584 7 bp Feature: gene Location: 36351-37598 bp Feature: domain Description: DUF4372 Location: 36375-36573 bp Feature: domain Description: DUF4 372 Location: 36375-36573 bp Feature: domain Description: DDE_Tnp_1 Location: 36741-37383 bp Feature: domain Description: DDE_Tnp_1 Location: 3674 1-37383 bp Feature: gene Location: 37923-38804 bp Feature: domain Description: ZntC Location: 38013-38796 bp Feature: domain Description: ZntC Location: 38013-38796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FN3 (smart00060), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), ZntC (cd01018)

Seq: PLTF01000092.1 Fibrobacteres bacterium isolate bog_1184 73.20120700_S1D.234_contig_505622, whole genome shotgun sequence (6287 bp)
Overview 1 RT 1: 2581-5647 bp Neighborhood of RT #1 [2581, 6006] YbbJ KOG2620 RVT-GII Feature: gene Location: 2581-3015 bp Feature: domain Description: YbbJ Location: 2587-3007 bp Feature: domain Description: YbbJ Location: 25 87-3007 bp Feature: gene Location: 3028-3948 bp Feature: domain Description: KOG2620 Location: 3100-3940 bp Feature: domain Description: KOG2620 Location: 3100-3940 bp Feature: gene Location: 4681-6006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4963-5647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4963-5 647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbbJ (COG1585), KOG2620 (KOG2620, Prohibitins and stomatins of the PID superfamily ), RVT-GII

Seq: PLTF01000115.1 Fibrobacteres bacterium isolate bog_1184 73.20120700_S1D.234_contig_76191, whole genome shotgun sequence (20760 bp)
Overview 1 RT 1: 15030-20278 bp Neighborhood of RT #1 [15030, 20550] XynE_like SufI RVT-GII GIIM Feature: gene Location: 15030-16547 bp Feature: domain Description: XynE_like Location: 15633-16245 bp Feature: domain Description: XynE_like Location: 156 33-16 245 bp Feature: gene Location: 16667-18913 bp Feature: domain Description: SufI Location: 16994-18620 bp Feature: domain Description: SufI Location: 16 994-186 20 bp Feature: gene Location: 19045-20550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19381-19996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19381-19996 bp Feature: domain Description: GIIM Note: maturase Location: 20047-20278 bp Feature: domain Description: GIIM Note: maturase Location: 20047-20278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XynE_like (cd01830), SufI (COG2132), RVT-GII, GIIM (pfam08388)