myRT

myRT report for GCA_003164735.1_20120700_S1D

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Seq: PLUA01000071.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1452 73.20120700_S1D.12_contig_4653, whole genome shotgun sequence (24191 bp)
Overview 1 RT 1: 3061-6103 bp Neighborhood of RT #1 [3061, 6103] RVT_N RVT-GII GIIM HTH_XRE Feature: gene Location: 3061-3246 bp Feature: gene Location: 3489-3761 bp Feature: gene Location: 3846-5354 bp Feature: RT Description: RVT_N Location: 3897-4140 bp Feature: RT Description: RVT_N Location: 3897-41 40 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4185-4830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 85-4830 bp Feature: domain Description: GIIM Note: maturase Location: 4890-5118 bp Feature: domain Description: GIIM Note: maturase Location: 4890-51 1 8 bp Feature: gene Location: 5485-5886 bp Feature: domain Description: HTH_XRE Location: 5710-5872 bp Feature: domain Description: HTH_XRE Location: 571 0-5872 bp Feature: gene Location: 5918-6103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: PLUA01000050.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1452 73.20120700_S1D.12_contig_6317, whole genome shotgun sequence (5175 bp)
Overview 1 RT 1: 136-2316 bp Neighborhood of RT #1 [136, 2316] RVT_N RVT-GII GIIM Feature: gene Location: 136-1644 bp Feature: RT Description: RVT_N Location: 187-430 bp Feature: RT Description: RVT_N Location: 187-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-1120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-112 0 bp Feature: domain Description: GIIM Note: maturase Location: 1177-1408 bp Feature: domain Description: GIIM Note: maturase Location: 1177-1408 bp Feature: gene Location: 1690-1938 bp Feature: gene Location: 2032-2316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PLUA01000064.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1452 73.20120700_S1D.12_contig_6779, whole genome shotgun sequence (40369 bp)
Overview 1 RT 1: 33903-37340 bp Neighborhood of RT #1 [33903, 37340] KdpC RVT-GII GIIM Feature: gene Location: 33903-34526 bp Feature: domain Description: KdpC Location: 33921-34476 bp Feature: domain Description: KdpC Location: 3 3 921-3 4476 bp Feature: gene Location: 34973-35143 bp Feature: gene Location: 35179-36063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35185-35539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5185-3 553 9 bp Feature: domain Description: GIIM Note: maturase Location: 35599-35827 bp Feature: domain Description: GIIM Note: maturase Location: 3 5599-3 5827 bp Feature: gene Location: 36330-36461 bp Feature: gene Location: 37053-37340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KdpC (pfam02669), RVT-GII, GIIM (pfam08388)