myRT

myRT report for GCA_003164785.1_20120700_S1D

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Seq: PLUE01000014.1 Gammaproteobacteria bacterium isolate bog_1223 73.20120700_S1D.105_contig_115710, whole genome shotgun sequence (42369 bp)
Overview 1 RT 1: 32037-36694 bp Neighborhood of RT #1 [32037, 36960] InsE PHA02517 RVT-GII GIIM PHA02517 Recombinase Zn_ribbon_recom Recombinase Feature: gene Location: 32037-32351 bp Feature: domain Description: InsE Location: 32040-32331 bp Feature: domain Description: InsE Location: 32040-32331 bp Feature: gene Location: 32351-32779 bp Feature: domain Description: PHA02517 Location: 32399-32747 bp Feature: domain Description: PHA0251 7 Location: 32399-32747 bp Feature: gene Location: 33397-34935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33670-34414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33670-3441 4 bp Feature: domain Description: GIIM Note: maturase Location: 34534-34714 bp Feature: domain Description: GIIM Note: maturase Location: 34534-3471 4 bp Feature: gene Location: 35101-35304 bp Feature: domain Description: PHA02517 Location: 35113-35293 bp Feature: domain Description: PHA0251 7 Location: 351 1 3-35293 bp Feature: gene Location: 35311-36960 bp Feature: domain Description: Recombinase Location: 35467-35815 bp Feature: domain Description: Recombinase Location: 35467-3581 5 bp Feature: domain Description: Zn_ribbon_recom Location: 35875-36049 bp Feature: domain Description: Zn_ribbon_recom Location: 35875-36049 bp Feature: domain Description: Recombinase Location: 36562-36694 bp Feature: domain Description: Recombinase Location: 36562-36694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: PLUE01000061.1 Gammaproteobacteria bacterium isolate bog_1223 73.20120700_S1D.105_contig_14050, whole genome shotgun sequence (19753 bp)
Overview 1 RT 1: 12865-19000 bp Neighborhood of RT #1 [12865, 19000] RelE YiaG RVT-GII Feature: gene Location: 12865-13272 bp Feature: domain Description: RelE Location: 12889-13240 bp Feature: domain Description: RelE Location: 12 889-132 40 bp Feature: gene Location: 13247-13555 bp Feature: domain Description: YiaG Location: 13253-13550 bp Feature: domain Description: YiaG Location: 132 53-13550 bp Feature: gene Location: 14140-15498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14395-15082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14395-15082 bp Feature: gene Location: 16272-18737 bp Feature: gene Location: 18845-19000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), YiaG (COG2944), RVT-GII

Seq: PLUE01000045.1 Gammaproteobacteria bacterium isolate bog_1223 73.20120700_S1D.105_contig_49627, whole genome shotgun sequence (8639 bp)
Overview 1 RT 1: 2596-5101 bp Neighborhood of RT #1 [2596, 5101] DDE_Tnp_IS66_C RVT-GII Feature: gene Location: 2596-2766 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2602-2704 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2602-2704 bp Feature: gene Location: 3127-3441 bp Feature: gene Location: 3607-4119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3610-4108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 610-4108 bp Feature: gene Location: 4437-4910 bp Feature: gene Location: 4964-5101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII

Seq: PLUE01000056.1 Gammaproteobacteria bacterium isolate bog_1223 73.20120700_S1D.105_contig_77153, whole genome shotgun sequence (16575 bp)
Overview 1 RT 1: 1060-6703 bp Neighborhood of RT #1 [1060, 6927] rve HTH_28 RVT-GII GIIM COG4861 COG4861 Feature: gene Location: 1060-2964 bp Feature: domain Description: rve Location: 1555-1885 bp Feature: domain Description: rve Location: 1555-1885 bp Feature: gene Location: 2979-3329 bp Feature: domain Description: HTH_28 Location: 3027-3180 bp Feature: domain Description: HTH_28 Location: 3027-3180 bp Feature: gene Location: 3551-5098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3854-4664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3854 -4 664 bp Feature: domain Description: GIIM Note: maturase Location: 4739-4949 bp Feature: domain Description: GIIM Note: maturase Location: 4 739-4 94 9 bp Feature: gene Location: 5102-5425 bp Feature: gene Location: 5800-6927 bp Feature: domain Description: COG4861 Location: 6118-6496 bp Feature: domain Description: COG4 861 Location: 6118-64 96 bp Feature: domain Description: COG4861 Location: 6505-6703 bp Feature: domain Description: COG4 861 Location: 6505-6703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), HTH_28 (pfam13518), RVT-GII, GIIM (pfam08388), COG4861 (Uncharacterized protein )

Seq: PLUE01000069.1 Gammaproteobacteria bacterium isolate bog_1223 73.20120700_S1D.105_contig_8334, whole genome shotgun sequence (559754 bp)
Overview 1 RT 1: 527532-538566 bp Neighborhood of RT #1 [527532, 539105] S1-P1_nuclease RVT-UG1 RecD RecD AAA_15 Feature: gene Location: 527532-527756 bp Feature: gene Location: 528112-529074 bp Feature: domain Description: S1-P1_nuclease Location: 528190-528925 bp Feature: domain Description: S1-P1_nuclease Location: 5 28190-5 28925 bp Feature: gene Location: 530396-534157 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 530996-531494 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 5 30996-5 31494 bp Feature: gene Location: 534171-537932 bp Feature: domain Description: RecD Location: 536004-536466 bp Feature: domain Description: RecD Location: 5 36004-5 36466 bp Feature: domain Description: RecD Location: 536880-537456 bp Feature: domain Description: RecD Location: 5 36880-5 3745 6 bp Feature: gene Location: 538410-539105 bp Feature: domain Description: AAA_15 Location: 538413-538566 bp Feature: domain Description: AAA_15 Location: 5 38413-5 385 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT S1-P1_nuclease (pfam02265), RVT-UG1, RecD (COG0507), AAA_15 (pfam13175)