myRT

myRT report for GCA_003165035.1_20120700_S1D

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Seq: PLSE01000029.1 Acidobacteriaceae bacterium isolate bog_372 73.20120700_S1D.48_contig_14036, whole genome shotgun sequence (29477 bp)
Overview 1 RT 1: 22798-27780 bp Neighborhood of RT #1 [22798, 27780] PRK12740 RVT-GII RVT-GII RVT-GII Feature: gene Location: 22798-24819 bp Feature: domain Description: PRK12740 Location: 22801-24772 bp Feature: domain Description: PRK1 2740 Location: 22801 -24772 bp Feature: gene Location: 24853-25167 bp Feature: gene Location: 25859-26062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25895-26018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25895-2601 8 bp Feature: gene Location: 26084-26332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26087-26288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26087-26288 bp Feature: gene Location: 26380-26826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26665-26818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26665-2681 8 bp Feature: gene Location: 27070-27372 bp Feature: gene Location: 27607-27780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12740 (elongation factor G-like protein EF-G2), RVT-GII

Seq: PLSE01000145.1 Acidobacteriaceae bacterium isolate bog_372 73.20120700_S1D.48_contig_204323, whole genome shotgun sequence (11875 bp)
Overview 1 RT 1: 1-3689 bp Neighborhood of RT #1 [1, 4090] RVT-GII GIIM HTH_3 Feature: gene Location: 1-471 bp Feature: gene Location: 576-1268 bp Feature: gene Location: 1611-2717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1680-2340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1680-2 340 bp Feature: domain Description: GIIM Note: maturase Location: 2412-2616 bp Feature: domain Description: GIIM Note: maturase Location: 2 412 -2 616 bp Feature: gene Location: 2994-3455 bp Feature: gene Location: 3461-4090 bp Feature: domain Description: HTH_3 Location: 3536-3689 bp Feature: domain Description: HTH_3 Location: 3536-3689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_3 (pfam01381)

Seq: PLSE01000049.1 Acidobacteriaceae bacterium isolate bog_372 73.20120700_S1D.48_contig_54138, whole genome shotgun sequence (4381 bp)
Overview 1 RT 1: 19-4380 bp Neighborhood of RT #1 [19, 4379] P-type_ATPase_H RVT-GII GIIM TnpB_IS66 Feature: gene Location: 19-2568 bp Feature: domain Description: P-type_ATPase_H Location: 166-2488 bp Feature: domain Description: P-type_ATPase_H Location: 166-2488 bp Feature: gene Location: 3088-3783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3157-3406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 157-3 406 bp Feature: domain Description: GIIM Note: maturase Location: 3478-3697 bp Feature: domain Description: GIIM Note: maturase Location: 3 478-3 697 bp Feature: gene Location: 4029-4184 bp Feature: gene Location: 4197-4379 bp Feature: domain Description: TnpB_IS66 Location: 4215-4380 bp Feature: domain Description: TnpB_IS66 Location: 4215-43 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-type_ATPase_H (cd02076), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)

Seq: PLSE01000013.1 Acidobacteriaceae bacterium isolate bog_372 73.20120700_S1D.48_contig_63611, whole genome shotgun sequence (9274 bp)
Overview 1 RT 1: 116-3803 bp Neighborhood of RT #1 [116, 4162] RVT-GII YgiQ Feature: gene Location: 116-1438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1061 bp Feature: gene Location: 1440-1826 bp Feature: gene Location: 2558-4162 bp Feature: domain Description: YgiQ Location: 2714-3803 bp Feature: domain Description: YgiQ Location: 2714 -3803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YgiQ (COG1032)

Seq: PLSE01000161.1 Acidobacteriaceae bacterium isolate bog_372 73.20120700_S1D.48_contig_8869, whole genome shotgun sequence (33933 bp)
Overview 1 RT 1: 29310-33880 bp Neighborhood of RT #1 [29310, 33930] AAK_UMPK-PyrH-Ec RecQ RecQ RVT-Retrons Trypsin_2 tsf Feature: gene Location: 29310-30029 bp Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 29331-30021 bp Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 29331-30021 bp Feature: gene Location: 30190-31734 bp Feature: domain Description: RecQ Location: 30205-31426 bp Feature: domain Description: RecQ Location: 30205 -31426 bp Feature: domain Description: RecQ Location: 31510-31729 bp Feature: domain Description: RecQ Location: 315 10-31729 bp Feature: gene Location: 31975-33633 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32143-32743 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32143-32743 bp Feature: domain Description: Trypsin_2 Location: 33133-33532 bp Feature: domain Description: Trypsin_2 Location: 33133-335 32 bp Feature: gene Location: 33685-33930 bp Feature: domain Description: tsf Location: 33691-33880 bp Feature: domain Description: tsf Location: 33691-33880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAK_UMPK-PyrH-Ec (cd04254), RecQ (COG0514), RVT-Retrons, Trypsin_2 (pfam13365), tsf (TIGR00116)