myRT

myRT report for GCA_003165075.1_20120700_S1D

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Seq: PLSM01000088.1 Acidobacteriaceae bacterium isolate bog_370 73.20120700_S1D.36_contig_1482, whole genome shotgun sequence (40238 bp)
Overview 1 RT 1: 47-4200 bp Neighborhood of RT #1 [47, 6170] RVT-GII GIIM CE4_NodB_like_5s_6s CarboxypepD_reg FepA Feature: gene Location: 47-838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50-410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50-41 0 bp Feature: domain Description: GIIM Note: maturase Location: 467-668 bp Feature: domain Description: GIIM Note: maturase Location: 467-668 bp Feature: gene Location: 978-1850 bp Feature: domain Description: CE4_NodB_like_5s_6s Location: 1110-1485 bp Feature: domain Description: CE4_NodB_like_5s_6s Location: 1 1 1 0-1 485 bp Feature: gene Location: 1989-6170 bp Feature: domain Description: CarboxypepD_reg Location: 2127-2367 bp Feature: domain Description: CarboxypepD_reg Location: 21 27-2367 bp Feature: domain Description: FepA Location: 3792-4200 bp Feature: domain Description: FepA Location: 3792-4200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CE4_NodB_like_5s_6s (cd10918), CarboxypepD_reg (pfam13620), FepA (COG4771)

Seq: PLSM01000077.1 Acidobacteriaceae bacterium isolate bog_370 73.20120700_S1D.36_contig_163882, whole genome shotgun sequence (4814 bp)
Overview 1 RT 1: 2-1438 bp Neighborhood of RT #1 [2, 1438] RVT-GII Feature: gene Location: 2-736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521-737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 1-737 bp Feature: gene Location: 723-893 bp Feature: gene Location: 1211-1438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PLSM01000108.1 Acidobacteriaceae bacterium isolate bog_370 73.20120700_S1D.36_contig_1841, whole genome shotgun sequence (146397 bp)
Overview 1 RT 1: 59020-64487 bp Neighborhood of RT #1 [59020, 64487] Big_5 RVT-GII RVT-GII RVT-GII DUF1998 Feature: gene Location: 59020-59271 bp Feature: domain Description: Big_5 Location: 59107-59233 bp Feature: domain Description: Big_5 Location: 59107-5923 3 bp Feature: gene Location: 59542-59820 bp Feature: gene Location: 59936-60649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59978-60281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59978-60281 bp Feature: gene Location: 60753-61940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60897-61593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60897-61593 bp Feature: gene Location: 62480-62941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62795-62846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62795-62846 bp Feature: gene Location: 62963-63760 bp Feature: domain Description: DUF1998 Location: 63407-63641 bp Feature: domain Description: DUF1998 Location: 63 407-63 641 bp Feature: gene Location: 64239-64487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_5 (pfam13205), RVT-GII, DUF1998 (pfam09369)

Seq: PLSM01000118.1 Acidobacteriaceae bacterium isolate bog_370 73.20120700_S1D.36_contig_30268, whole genome shotgun sequence (19749 bp)
Overview 1 RT 1: 18337-19312 bp Neighborhood of RT #1 [18337, 19650] RVT-GII GIIM Feature: gene Location: 18337-18630 bp Feature: gene Location: 18706-19137 bp Feature: gene Location: 18940-19650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18946-19048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1894 6-1904 8 bp Feature: domain Description: GIIM Note: maturase Location: 19114-19312 bp Feature: domain Description: GIIM Note: maturase Location: 19114 -19312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLSM01000105.1 Acidobacteriaceae bacterium isolate bog_370 73.20120700_S1D.36_contig_37951, whole genome shotgun sequence (10587 bp)
Overview 1 RT 1: 1-1281 bp Neighborhood of RT #1 [1, 1281] RVT-GII Y1_Tnp Feature: gene Location: 1-408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229-409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229-409 bp Feature: gene Location: 589-987 bp Feature: domain Description: Y1_Tnp Location: 676-943 bp Feature: domain Description: Y1_Tnp Location: 676-943 bp Feature: gene Location: 1096-1281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Y1_Tnp (pfam01797)

Seq: PLSM01000127.1 Acidobacteriaceae bacterium isolate bog_370 73.20120700_S1D.36_contig_6386, whole genome shotgun sequence (36654 bp)
Overview 1 RT 1: 33156-36640 bp Neighborhood of RT #1 [33156, 36651] FlaA1 RVT-GII Feature: gene Location: 33156-35069 bp Feature: domain Description: FlaA1 Location: 33222-35013 bp Feature: domain Description: FlaA1 Location: 33222-35013 bp Feature: gene Location: 35070-35876 bp Feature: gene Location: 36307-36651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36403-36640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 403-36 6 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FlaA1 (COG1086), RVT-GII

Seq: PLSM01000038.1 Acidobacteriaceae bacterium isolate bog_370 73.20120700_S1D.36_contig_65956, whole genome shotgun sequence (13615 bp)
Overview 1 RT 1: 3105-9847 bp Neighborhood of RT #1 [3105, 13305] Nitroreductase INT_RitA_C_like RVT-GII GIIM TPR TPR TPR_14 VCBS VCBS VCBS FG-GAP UnbV_ASPIC CarboxypepD_reg Feature: gene Location: 3105-3812 bp Feature: domain Description: Nitroreductase Location: 3129-3735 bp Feature: domain Description: Nitroreductase Location: 3129-37 35 bp Feature: gene Location: 3908-4615 bp Feature: domain Description: INT_RitA_C_like Location: 4229-4556 bp Feature: domain Description: INT_RitA_C_like Location: 4229-4556 bp Feature: gene Location: 5535-7601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5547-5748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5547 -57 48 bp Feature: domain Description: GIIM Note: maturase Location: 5802-6024 bp Feature: domain Description: GIIM Note: maturase Location: 5802-6024 bp Feature: domain Description: TPR Location: 6435-6711 bp Feature: domain Description: TPR Location: 6435-67 11 bp Feature: domain Description: TPR Location: 7050-7317 bp Feature: domain Description: TPR Location: 7 050-7 317 bp Feature: domain Description: TPR_14 Location: 7353-7464 bp Feature: domain Description: TPR_14 Location: 7 353-7 464 bp Feature: gene Location: 7612-9264 bp Feature: domain Description: VCBS Location: 7804-8023 bp Feature: domain Description: VCBS Location: 7 804-8023 bp Feature: domain Description: VCBS Location: 8293-8431 bp Feature: domain Description: VCBS Location: 8293-8431 bp Feature: domain Description: VCBS Location: 8563-8761 bp Feature: domain Description: VCBS Location: 8563-87 61 bp Feature: domain Description: FG-GAP Location: 8887-8950 bp Feature: domain Description: FG-GAP Location: 8887 -8950 bp Feature: domain Description: UnbV_ASPIC Location: 9046-9244 bp Feature: domain Description: UnbV_ASPIC Location: 9046-9244 bp Feature: gene Location: 9487-13305 bp Feature: domain Description: CarboxypepD_reg Location: 9607-9847 bp Feature: domain Description: CarboxypepD_reg Location: 9607 -9847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nitroreductase (pfam00881), INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388), TPR (smart00028), TPR_14 (pfam13428), VCBS (pfam13517), FG-GAP (pfam01839), UnbV_ASPIC (pfam07593), CarboxypepD_reg (pfam13620)