myRT

myRT report for GCA_003165115.1_20120700_S1D

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Seq: PLSJ01000435.1 Syntrophaceae bacterium isolate bog_1155 73.20120700_S1D.399_contig_12775, whole genome shotgun sequence (4215 bp)
Overview 1 RT 1: 15-3953 bp Neighborhood of RT #1 [15, 3953] RVT-GII NERD Feature: gene Location: 15-362 bp Feature: gene Location: 596-901 bp Feature: gene Location: 1236-2531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1518-2184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 8-21 84 bp Feature: gene Location: 2625-3341 bp Feature: domain Description: NERD Location: 2838-3189 bp Feature: domain Description: NERD Location: 2838-31 89 bp Feature: gene Location: 3780-3953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, NERD (pfam08378)

Seq: PLSJ01000093.1 Syntrophaceae bacterium isolate bog_1155 73.20120700_S1D.399_contig_319105, whole genome shotgun sequence (4904 bp)
Overview 1 RT 1: 1092-4824 bp Neighborhood of RT #1 [1092, 4901] AdeC RVT-GII INT_RitC_C_like Feature: gene Location: 1092-2651 bp Feature: domain Description: AdeC Location: 1116-2646 bp Feature: domain Description: AdeC Location: 1116-2 646 bp Feature: gene Location: 3103-3417 bp Feature: gene Location: 3673-4422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3964-4387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3964-4387 bp Feature: gene Location: 4497-4901 bp Feature: domain Description: INT_RitC_C_like Location: 4500-4824 bp Feature: domain Description: INT_RitC_C_like Location: 4500-482 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdeC (COG1001), RVT-GII, INT_RitC_C_like (cd01182)

Seq: PLSJ01000019.1 Syntrophaceae bacterium isolate bog_1155 73.20120700_S1D.399_contig_388584, whole genome shotgun sequence (4552 bp)
Overview 1 RT 1: 976-4349 bp Neighborhood of RT #1 [976, 4450] PinE HTH_17 HTH_17 RVT-GII GIIM Feature: gene Location: 976-3165 bp Feature: domain Description: PinE Location: 1021-1612 bp Feature: domain Description: PinE Location: 1021-1612 bp Feature: domain Description: HTH_17 Location: 2827-2956 bp Feature: domain Description: HTH_17 Location: 2827-2956 bp Feature: domain Description: HTH_17 Location: 3013-3124 bp Feature: domain Description: HTH_17 Location: 3 013 -3 124 bp Feature: gene Location: 3513-3656 bp Feature: gene Location: 3656-4450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3659-4061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 659-4061 bp Feature: domain Description: GIIM Note: maturase Location: 4142-4349 bp Feature: domain Description: GIIM Note: maturase Location: 4142-43 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), HTH_17 (pfam12728), RVT-GII, GIIM (pfam08388)

Seq: PLSJ01000203.1 Syntrophaceae bacterium isolate bog_1155 73.20120700_S1D.399_contig_760723, whole genome shotgun sequence (6592 bp)
Overview 1 RT 1: 2-2269 bp Neighborhood of RT #1 [2, 2269] DUF1015 RVT-CRISPR-like Feature: gene Location: 2-1048 bp Feature: domain Description: DUF1015 Location: 20-1034 bp Feature: domain Description: DUF1015 Location: 20-1034 bp Feature: gene Location: 1060-1539 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1099-1462 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1099-14 62 bp Feature: gene Location: 1295-2050 bp Feature: gene Location: 2111-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1015 (pfam06245), RVT-CRISPR

Seq: PLSJ01000334.1 Syntrophaceae bacterium isolate bog_1155 73.20120700_S1D.399_contig_883521, whole genome shotgun sequence (2971 bp)
Overview 1 RT 1: 1-1792 bp Neighborhood of RT #1 [1, 1792] RVT-GII GIIM NusG Feature: gene Location: 1-507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-112 bp Feature: domain Description: GIIM Note: maturase Location: 211-424 bp Feature: domain Description: GIIM Note: maturase Location: 211-424 bp Feature: gene Location: 915-1298 bp Feature: domain Description: NusG Location: 1029-1263 bp Feature: domain Description: NusG Location: 1029-1263 bp Feature: gene Location: 1361-1792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NusG (pfam02357)