myRT

myRT report for GCA_003165215.1_20120700_S1D

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Seq: PLSQ01000017.1 Acidimicrobiaceae bacterium isolate bog_758 73.20120700_S1D.33_contig_159864, whole genome shotgun sequence (3936 bp)
Overview 1 RT 1: 117-3252 bp Neighborhood of RT #1 [117, 3252] RVT-GII Feature: gene Location: 117-707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126-336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 26-336 bp Feature: gene Location: 1086-1433 bp Feature: gene Location: 1399-3252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PLSQ01000169.1 Acidimicrobiaceae bacterium isolate bog_758 73.20120700_S1D.33_contig_19345, whole genome shotgun sequence (14263 bp)
Overview 1 RT 1: 262-5861 bp Neighborhood of RT #1 [262, 6208] ExeA Mu-transpos_C RVT-GII Intron_maturas2 HNHc RVT-GII TetR_N XerD Feature: gene Location: 262-888 bp Feature: domain Description: ExeA Location: 286-766 bp Feature: domain Description: ExeA Location: 2 86-766 bp Feature: gene Location: 891-1538 bp Feature: domain Description: Mu-transpos_C Location: 1146-1293 bp Feature: domain Description: Mu-transpos_C Location: 1146-12 93 bp Feature: gene Location: 1592-2791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1628-2048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 8-2 048 bp Feature: domain Description: Intron_maturas2 Location: 2132-2405 bp Feature: domain Description: Intron_maturas2 Location: 2 132 -2 405 bp Feature: domain Description: HNHc Note: nucleases Location: 2588-2750 bp Feature: domain Description: HNHc Note: nucleases Location: 2 588-2 750 bp Feature: gene Location: 3037-3390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3298-3385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 98-3385 bp Feature: gene Location: 4003-4314 bp Feature: domain Description: TetR_N Location: 4039-4135 bp Feature: domain Description: TetR_N Location: 4039-4135 bp Feature: gene Location: 4304-6208 bp Feature: domain Description: XerD Location: 4982-5861 bp Feature: domain Description: XerD Location: 4982 -5861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ExeA (COG3267), Mu-transpos_C (pfam09299), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TetR_N (pfam00440), XerD (COG4974)

Seq: PLSQ01000037.1 Acidimicrobiaceae bacterium isolate bog_758 73.20120700_S1D.33_contig_31580, whole genome shotgun sequence (3891 bp)
Overview 1 RT 1: 2-3576 bp Neighborhood of RT #1 [2, 3671] RVT-GII RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 2-229 bp Feature: gene Location: 289-432 bp Feature: gene Location: 682-1779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898-1087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898-1087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093-1396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093 -13 96 bp Feature: domain Description: GIIM Note: maturase Location: 1474-1699 bp Feature: domain Description: GIIM Note: maturase Location: 1474-1699 bp Feature: gene Location: 2160-3671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2613-3273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2613 -3 273 bp Feature: domain Description: GIIM Note: maturase Location: 3363-3576 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 63 -3 576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PLSQ01000016.1 Acidimicrobiaceae bacterium isolate bog_758 73.20120700_S1D.33_contig_68633, whole genome shotgun sequence (12286 bp)
Overview 1 RT 1: 7748-11841 bp Neighborhood of RT #1 [7748, 11841] DUF1990 RVT-Retrons RVT-Retrons Feature: gene Location: 7748-8320 bp Feature: domain Description: DUF1990 Location: 7826-8285 bp Feature: domain Description: DUF1990 Location: 7826-8285 bp Feature: gene Location: 8378-8869 bp Feature: gene Location: 9126-9716 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9219-9480 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9219-94 80 bp Feature: gene Location: 9728-10402 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10118-10361 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10118-10361 bp Feature: gene Location: 10813-11841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1990 (pfam09348), RVT-Retrons

Seq: PLSQ01000167.1 Acidimicrobiaceae bacterium isolate bog_758 73.20120700_S1D.33_contig_85967, whole genome shotgun sequence (3797 bp)
Overview 1 RT 1: 743-3360 bp Neighborhood of RT #1 [743, 3360] HTH_MARR KOG2565 RVT-Retrons Feature: gene Location: 743-1204 bp Feature: domain Description: HTH_MARR Location: 830-1109 bp Feature: domain Description: HTH_MARR Location: 830-1109 bp Feature: gene Location: 1201-2439 bp Feature: domain Description: KOG2565 Location: 1225-2410 bp Feature: domain Description: KOG25 65 Location: 1225 -2410 bp Feature: gene Location: 2604-3122 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2646-2886 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2646-2886 bp Feature: gene Location: 3061-3360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_MARR (smart00347), KOG2565 (KOG2565, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ), RVT-Retrons