myRT

myRT report for GCA_003165235.1_20120700_S1D

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Seq: PLSV01000208.1 Syntrophobacteraceae bacterium isolate bog_1154 73.20120700_S1D.281_contig_163564, whole genome shotgun sequence (3027 bp)
Overview 1 RT 1: 3-3025 bp Neighborhood of RT #1 [3, 3025] Toprim_Crpt group_II_RT_mat RVT-UG19 Feature: gene Location: 3-128 bp Feature: domain Description: Toprim_Crpt Location: 6-117 bp Feature: domain Description: Toprim_Crpt Location: 6-1 1 7 bp Feature: gene Location: 450-2561 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 567-735 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 567-735 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 819-1287 bp Feature: RT Description: RVT-UG1 9 Note: UG1 9 RT Location: 81 9-1 287 bp Feature: gene Location: 2705-3025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_Crpt (pfam13342), group_II_RT_mat (TIGR04416), RVT-UG19

Seq: PLSV01000384.1 Syntrophobacteraceae bacterium isolate bog_1154 73.20120700_S1D.281_contig_17206, whole genome shotgun sequence (67626 bp)
Overview 1 RT 1: 2-2013 bp Neighborhood of RT #1 [2, 2027] RVT-GII YiaG Feature: gene Location: 2-766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254-752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 54-752 bp Feature: gene Location: 1129-1452 bp Feature: gene Location: 1782-2027 bp Feature: domain Description: YiaG Location: 1854-2013 bp Feature: domain Description: YiaG Location: 1854-2 013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YiaG (COG2944)

Seq: PLSV01000203.1 Syntrophobacteraceae bacterium isolate bog_1154 73.20120700_S1D.281_contig_212036, whole genome shotgun sequence (28563 bp)
Overview 1 RT 1: 26367-28539 bp Neighborhood of RT #1 [26367, 28562] RVT-GII Feature: gene Location: 26367-26681 bp Feature: gene Location: 27345-28184 bp Feature: gene Location: 27705-28562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28065-28539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28065-2853 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PLSV01000128.1 Syntrophobacteraceae bacterium isolate bog_1154 73.20120700_S1D.281_contig_241388, whole genome shotgun sequence (6008 bp)
Overview 1 RT 1: 2-3599 bp Neighborhood of RT #1 [2, 3619] RVT-GII GIIM RVT-GII GIIM xerC Feature: gene Location: 2-145 bp Feature: gene Location: 501-1592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549-1206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 9-1206 bp Feature: domain Description: GIIM Note: maturase Location: 1287-1518 bp Feature: domain Description: GIIM Note: maturase Location: 1287-1518 bp Feature: gene Location: 1645-2328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1663-1816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1663-1816 bp Feature: domain Description: GIIM Note: maturase Location: 1876-2104 bp Feature: domain Description: GIIM Note: maturase Location: 1876-2104 bp Feature: gene Location: 2330-2617 bp Feature: gene Location: 2933-3619 bp Feature: domain Description: xerC Location: 3101-3599 bp Feature: domain Description: xerC Location: 3101-3599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), xerC (PRK01287)

Seq: PLSV01000367.1 Syntrophobacteraceae bacterium isolate bog_1154 73.20120700_S1D.281_contig_284683, whole genome shotgun sequence (12159 bp)
Overview 1 RT 1: 2291-9452 bp Neighborhood of RT #1 [2291, 9466] RVT-UG1 Mrr_cat FwdE Feature: gene Location: 2291-2701 bp Feature: gene Location: 2734-2919 bp Feature: gene Location: 3031-6780 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3613-4108 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3613-4108 bp Feature: gene Location: 6962-8452 bp Feature: domain Description: Mrr_cat Location: 7010-7274 bp Feature: domain Description: Mrr_cat Location: 7010-7274 bp Feature: gene Location: 8855-9466 bp Feature: domain Description: FwdE Location: 8879-9452 bp Feature: domain Description: FwdE Location: 8879-945 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, Mrr_cat (pfam04471), FwdE (COG2191)

Seq: PLSV01000419.1 Syntrophobacteraceae bacterium isolate bog_1154 73.20120700_S1D.281_contig_308735, whole genome shotgun sequence (8661 bp)
Overview 1 RT 1: 254-5841 bp Neighborhood of RT #1 [254, 5841] AAA_15 TOPRIM_OLD RVT-Retrons Feature: gene Location: 254-421 bp Feature: gene Location: 724-2724 bp Feature: domain Description: AAA_15 Location: 727-1939 bp Feature: domain Description: AAA_15 Location: 727-1939 bp Feature: domain Description: TOPRIM_OLD Location: 2155-2383 bp Feature: domain Description: TOPRIM_OLD Location: 2155-2383 bp Feature: gene Location: 2923-3849 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3034-3628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3034-36 28 bp Feature: gene Location: 3864-4826 bp Feature: gene Location: 5389-5841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-Retrons

Seq: PLSV01000193.1 Syntrophobacteraceae bacterium isolate bog_1154 73.20120700_S1D.281_contig_436670, whole genome shotgun sequence (3984 bp)
Overview 1 RT 1: 2646-3972 bp Neighborhood of RT #1 [2646, 3983] RVT-GII Feature: gene Location: 2646-2819 bp Feature: gene Location: 2833-3096 bp Feature: gene Location: 3159-3983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495-3972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495-397 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PLSV01000283.1 Syntrophobacteraceae bacterium isolate bog_1154 73.20120700_S1D.281_contig_796733, whole genome shotgun sequence (2602 bp)
Overview 1 RT 1: 2-2217 bp Neighborhood of RT #1 [2, 2600] DDE_Tnp_1_4 DDE_Tnp_1_4 MhpC RVT-GII Feature: gene Location: 2-601 bp Feature: domain Description: DDE_Tnp_1_4 Location: 26-119 bp Feature: domain Description: DDE_Tnp_1_4 Location: 26-119 bp Feature: domain Description: DDE_Tnp_1_4 Location: 134-293 bp Feature: domain Description: DDE_Tnp_1_4 Location: 134-293 bp Feature: gene Location: 746-1705 bp Feature: domain Description: MhpC Location: 926-1688 bp Feature: domain Description: MhpC Location: 926-168 8 bp Feature: gene Location: 1935-2600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1938-2217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1938 -2217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), MhpC (COG0596), RVT-GII