myRT

myRT report for GCA_003165595.1_20120800_E1D

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Seq: PLWQ01000004.1 Fibrobacteres bacterium isolate fen_1185 73.20120800_E1D.40_contig_4593, whole genome shotgun sequence (72177 bp)
Overview 1 RT 1: 16429-22808 bp Neighborhood of RT #1 [16429, 22867] DUF1016_N RVT-UG14 HsdR EcoEI_R_C Polbeta RMtype1_S_CloLW9ORF3270P-TRD1-CR1_like RMtype1_S_CloLW9ORF3270P-TRD1-CR1_like Feature: gene Location: 16429-16878 bp Feature: domain Description: DUF1016_N Location: 16480-16729 bp Feature: domain Description: DUF1 01 6_N Location: 1 6480-1 6729 bp Feature: gene Location: 16993-17184 bp Feature: gene Location: 17419-18972 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 17854-18334 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 1 7854-1 8334 bp Feature: gene Location: 18978-21284 bp Feature: domain Description: HsdR Location: 18981-20598 bp Feature: domain Description: HsdR Location: 1 8981 -20598 bp Feature: domain Description: EcoEI_R_C Location: 20802-21270 bp Feature: domain Description: EcoEI_R_C Location: 20802-21 270 bp Feature: gene Location: 21398-22867 bp Feature: domain Description: Polbeta Location: 21407-21677 bp Feature: domain Description: Polbeta Location: 21 407-21 677 bp Feature: domain Description: RMtype1_S_CloLW9ORF3270P-TRD1-CR1_like Location: 21713-22229 bp Feature: domain Description: RMtype1 _S_CloLW9ORF3270P-TRD1 -CR1 _like Location: 21 71 3-22229 bp Feature: domain Description: RMtype1_S_CloLW9ORF3270P-TRD1-CR1_like Location: 22487-22808 bp Feature: domain Description: RMtype1 _S_CloLW9ORF3270P-TRD1 -CR1 _like Location: 22487-22808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1016_N (pfam17761), RVT-UG14, HsdR (COG4096), EcoEI_R_C (pfam08463), Polbeta (pfam18765), RMtype1_S_CloLW9ORF3270P-TRD1-CR1_like (cd17499)

Seq: PLWQ01000022.1 Fibrobacteres bacterium isolate fen_1185 73.20120800_E1D.40_contig_72847, whole genome shotgun sequence (2657 bp)
Overview 1 RT 1: 34-2590 bp Neighborhood of RT #1 [34, 2590] RVT-GII GIIM Feature: gene Location: 34-558 bp Feature: gene Location: 683-1987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1604 bp Feature: domain Description: GIIM Note: maturase Location: 1676-1889 bp Feature: domain Description: GIIM Note: maturase Location: 1676-1889 bp Feature: gene Location: 2062-2355 bp Feature: gene Location: 2435-2590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)