myRT

myRT report for GCA_003165795.1_20110700_S3M

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Seq: PMWW01000199.1 Acidobacteriaceae bacterium isolate bog_169 73.20110700_S3M.38_contig_12099, whole genome shotgun sequence (39459 bp)
Overview 1 RT 1: 29308-35331 bp Neighborhood of RT #1 [29308, 35459] AAK_UMPK-PyrH-Ec RecQ RecQ RVT-Retrons Trypsin_2 tsf rpsB Feature: gene Location: 29308-30027 bp Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 29329-30019 bp Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 29329-3001 9 bp Feature: gene Location: 30188-31732 bp Feature: domain Description: RecQ Location: 30203-31424 bp Feature: domain Description: RecQ Location: 30203-31 424 bp Feature: domain Description: RecQ Location: 31508-31727 bp Feature: domain Description: RecQ Location: 31 508-31 727 bp Feature: gene Location: 31973-33631 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32141-32741 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 321 41 -32741 bp Feature: domain Description: Trypsin_2 Location: 33131-33530 bp Feature: domain Description: Trypsin_2 Location: 331 31 -33530 bp Feature: gene Location: 33683-34339 bp Feature: domain Description: tsf Location: 33704-34289 bp Feature: domain Description: tsf Location: 33704-34289 bp Feature: gene Location: 34557-35459 bp Feature: domain Description: rpsB Location: 34587-35331 bp Feature: domain Description: rpsB Location: 34587-35331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAK_UMPK-PyrH-Ec (cd04254), RecQ (COG0514), RVT-Retrons, Trypsin_2 (pfam13365), tsf (TIGR00116), rpsB (PRK12311)

Seq: PMWW01000168.1 Acidobacteriaceae bacterium isolate bog_169 73.20110700_S3M.38_contig_1412, whole genome shotgun sequence (14654 bp)
Overview 1 RT 1: 9550-14638 bp Neighborhood of RT #1 [9550, 14652] PPK2_rel_1 P-type_ATPase_H RVT-GII GIIM TnpB_IS66 Feature: gene Location: 9550-10197 bp Feature: domain Description: PPK2_rel_1 Location: 9598-10063 bp Feature: domain Description: PPK2 _rel_1 Location: 9598-10063 bp Feature: gene Location: 10216-12765 bp Feature: domain Description: P-type_ATPase_H Location: 10363-12685 bp Feature: domain Description: P-type_ATPase_H Location: 10363-12 685 bp Feature: gene Location: 13285-13980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13354-13603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13354-13603 bp Feature: domain Description: GIIM Note: maturase Location: 13675-13894 bp Feature: domain Description: GIIM Note: maturase Location: 13675-13894 bp Feature: gene Location: 14098-14439 bp Feature: gene Location: 14452-14652 bp Feature: domain Description: TnpB_IS66 Location: 14470-14638 bp Feature: domain Description: TnpB_IS66 Location: 14470-14638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PPK2_rel_1 (TIGR03709), P-type_ATPase_H (cd02076), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)

Seq: PMWW01000145.1 Acidobacteriaceae bacterium isolate bog_169 73.20110700_S3M.38_contig_24621, whole genome shotgun sequence (29879 bp)
Overview 1 RT 1: 11580-16699 bp Neighborhood of RT #1 [11580, 17100] RVT-GII GIIM HTH_3 Feature: gene Location: 11580-13481 bp Feature: gene Location: 13586-14278 bp Feature: gene Location: 14621-15727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14690-15350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14690-153 50 bp Feature: domain Description: GIIM Note: maturase Location: 15422-15626 bp Feature: domain Description: GIIM Note: maturase Location: 15422-15626 bp Feature: gene Location: 16004-16465 bp Feature: gene Location: 16471-17100 bp Feature: domain Description: HTH_3 Location: 16546-16699 bp Feature: domain Description: HTH_3 Location: 16546-16699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_3 (pfam01381)

Seq: PMWW01000061.1 Acidobacteriaceae bacterium isolate bog_169 73.20110700_S3M.38_contig_58507, whole genome shotgun sequence (9240 bp)
Overview 1 RT 1: 5208-8877 bp Neighborhood of RT #1 [5208, 9053] QueC RVT_N RVT-GII YkfC Feature: gene Location: 5208-6875 bp Feature: domain Description: QueC Location: 6150-6381 bp Feature: domain Description: QueC Location: 6150-6381 bp Feature: gene Location: 6840-7097 bp Feature: gene Location: 7578-9053 bp Feature: domain Description: RVT_N Location: 7623-7866 bp Feature: domain Description: RVT_N Location: 7623-7866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7911-8559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7911-8559 bp Feature: domain Description: YkfC Location: 8691-8877 bp Feature: domain Description: YkfC Location: 8691-8877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QueC (pfam06508), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: PMWW01000027.1 Acidobacteriaceae bacterium isolate bog_169 73.20110700_S3M.38_contig_77557, whole genome shotgun sequence (4887 bp)
Overview 1 RT 1: 1537-4434 bp Neighborhood of RT #1 [1537, 4811] Gloeo_Verruco Gloeo_Verruco PEP-CTERM RVT-GII Feature: gene Location: 1537-1803 bp Feature: domain Description: Gloeo_Verruco Location: 1552-1621 bp Feature: domain Description: Gloeo_Verruco Location: 15 5 2-1621 bp Feature: domain Description: Gloeo_Verruco Location: 1717-1801 bp Feature: domain Description: Gloeo_Verruco Location: 1717-1801 bp Feature: gene Location: 2218-2820 bp Feature: domain Description: PEP-CTERM Location: 2740-2809 bp Feature: domain Description: PEP-CTERM Location: 2740-2809 bp Feature: gene Location: 3249-4811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3744-4434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3744-4434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gloeo_Verruco (TIGR03803), PEP-CTERM, RVT-GII