myRT

myRT report for GCA_003165855.1_20110700_S3M

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Seq: PMXH01000519.1 Acidobacteriaceae bacterium isolate bog_174 73.20110700_S3M.98_contig_19426, whole genome shotgun sequence (3030 bp)
Overview 1 RT 1: 173-2855 bp Neighborhood of RT #1 [173, 2855] RVT-Retrons Trypsin_2 RVT-Retrons DUF2442 Feature: gene Location: 173-1273 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 176-401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 76-401 bp Feature: domain Description: Trypsin_2 Location: 788-1181 bp Feature: domain Description: Trypsin_2 Location: 788-1 1 81 bp Feature: gene Location: 1243-1782 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1396-1645 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 396-1 645 bp Feature: gene Location: 1988-2308 bp Feature: domain Description: DUF2442 Location: 2006-2204 bp Feature: domain Description: DUF2442 Location: 2006-2204 bp Feature: gene Location: 2241-2855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), DUF2442 (pfam10387)

Seq: PMXH01000059.1 Acidobacteriaceae bacterium isolate bog_174 73.20110700_S3M.98_contig_41454, whole genome shotgun sequence (3261 bp)
Overview 1 RT 1: 104-3096 bp Neighborhood of RT #1 [104, 3096] HTH_32 RVT-GII GIIM Feature: gene Location: 104-583 bp Feature: domain Description: HTH_32 Location: 326-569 bp Feature: domain Description: HTH_32 Location: 32 6-569 bp Feature: gene Location: 1126-2544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1489-2107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1489-2 107 bp Feature: domain Description: GIIM Note: maturase Location: 2155-2359 bp Feature: domain Description: GIIM Note: maturase Location: 2 155-2 359 bp Feature: gene Location: 2641-2892 bp Feature: gene Location: 2920-3096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), RVT-GII, GIIM (pfam08388)

Seq: PMXH01000036.1 Acidobacteriaceae bacterium isolate bog_174 73.20110700_S3M.98_contig_52290, whole genome shotgun sequence (2570 bp)
Overview 1 RT 1: 1-2545 bp Neighborhood of RT #1 [1, 2568] RVT-GII RHS_repeat Rhs_assc_core 3D_containing_proteins Feature: gene Location: 1-636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-265 bp Feature: gene Location: 1002-1787 bp Feature: gene Location: 1594-2568 bp Feature: domain Description: RHS_repeat Location: 1636-1732 bp Feature: domain Description: RHS_repeat Location: 163 6-173 2 bp Feature: domain Description: Rhs_assc_core Location: 1939-2164 bp Feature: domain Description: Rhs_assc_core Location: 193 9-2164 bp Feature: domain Description: 3D_containing_proteins Location: 2197-2545 bp Feature: domain Description: 3 D_containing_proteins Location: 2197-2545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RHS_repeat (pfam05593), Rhs_assc_core (TIGR03696), 3D_containing_proteins (cd14667), RVT-GII

Seq: PMXH01000373.1 Acidobacteriaceae bacterium isolate bog_174 73.20110700_S3M.98_contig_6849, whole genome shotgun sequence (21662 bp)
Overview 1 RT 1: 18752-21282 bp Neighborhood of RT #1 [18752, 21659] PRK05434 RVT-GII Feature: gene Location: 18752-20365 bp Feature: domain Description: PRK05434 Location: 18761-20342 bp Feature: domain Description: PRK054 34 Location: 18761-2034 2 bp Feature: gene Location: 20579-20752 bp Feature: gene Location: 20817-21659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20820-21282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20820-21282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05434 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase), RVT-GII