myRT

myRT report for GCA_003166295.1_20110700_S2M

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Seq: PMWD01000005.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1387 73.20110700_S2M.11_contig_13055, whole genome shotgun sequence (5119 bp)
Overview 1 RT 1: 133-2313 bp Neighborhood of RT #1 [133, 2313] RVT_N RVT-GII GIIM Feature: gene Location: 133-1641 bp Feature: RT Description: RVT_N Location: 184-427 bp Feature: RT Description: RVT_N Location: 1 84-427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472-1117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472-1 1 1 7 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1405 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 74-1 405 bp Feature: gene Location: 1687-1935 bp Feature: gene Location: 2029-2313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PMWD01000232.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1387 73.20110700_S2M.11_contig_1588, whole genome shotgun sequence (24073 bp)
Overview 1 RT 1: 18086-21128 bp Neighborhood of RT #1 [18086, 21128] HTH_XRE RVT_N RVT-GII GIIM Feature: gene Location: 18086-18271 bp Feature: gene Location: 18303-18704 bp Feature: domain Description: HTH_XRE Location: 18528-18690 bp Feature: domain Description: HTH_XRE Location: 1852 8-18690 bp Feature: gene Location: 18835-20343 bp Feature: RT Description: RVT_N Location: 18886-19129 bp Feature: RT Description: RVT_N Location: 18886-1912 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19174-19819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19174-19819 bp Feature: domain Description: GIIM Note: maturase Location: 19879-20107 bp Feature: domain Description: GIIM Note: maturase Location: 19879-2 0107 bp Feature: gene Location: 20428-20700 bp Feature: gene Location: 20943-21128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PMWD01000117.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1387 73.20110700_S2M.11_contig_17540, whole genome shotgun sequence (11610 bp)
Overview 1 RT 1: 6497-11608 bp Neighborhood of RT #1 [6497, 11608] HypF HypF COG3905 RVT_N RVT-GII GIIM Feature: gene Location: 6497-9169 bp Feature: domain Description: HypF Location: 6539-7406 bp Feature: domain Description: HypF Location: 653 9-7406 bp Feature: domain Description: HypF Location: 7508-9158 bp Feature: domain Description: HypF Location: 7508-9158 bp Feature: gene Location: 9274-9480 bp Feature: domain Description: COG3905 Location: 9364-9442 bp Feature: domain Description: COG3 905 Location: 93 64-9442 bp Feature: gene Location: 9821-11347 bp Feature: RT Description: RVT_N Location: 9872-10115 bp Feature: RT Description: RVT_N Location: 9872-10115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10160-10808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10160-10808 bp Feature: domain Description: GIIM Note: maturase Location: 10868-11093 bp Feature: domain Description: GIIM Note: maturase Location: 10868-11093 bp Feature: gene Location: 9869-11608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HypF (COG0068), COG3905 (Predicted transcriptional regulator ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PMWD01000027.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1387 73.20110700_S2M.11_contig_5181, whole genome shotgun sequence (7057 bp)
Overview 1 RT 1: 663-3810 bp Neighborhood of RT #1 [663, 3810] KdpC RVT-GII GIIM Feature: gene Location: 663-1286 bp Feature: domain Description: KdpC Location: 681-1236 bp Feature: domain Description: KdpC Location: 681-1236 bp Feature: gene Location: 1733-1903 bp Feature: gene Location: 1939-2823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1945-2299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194 5-2299 bp Feature: domain Description: GIIM Note: maturase Location: 2359-2587 bp Feature: domain Description: GIIM Note: maturase Location: 2359-2587 bp Feature: gene Location: 3090-3221 bp Feature: gene Location: 3613-3810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KdpC (pfam02669)