myRT

myRT report for GCA_003166475.1_20110700_S2D

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Seq: PMVV01000441.1 Bryobacterales bacterium isolate bog_159 73.20110700_S2D.32_contig_734, whole genome shotgun sequence (28990 bp)
Overview 1 RT 1: 332-5628 bp Neighborhood of RT #1 [332, 5639] RVT-Retrons ADOP PIN_VapC4-5_FitB-like Feature: gene Location: 332-523 bp Feature: gene Location: 654-821 bp Feature: gene Location: 1092-2423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1548-2193 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 548-21 93 bp Feature: gene Location: 2308-4917 bp Feature: domain Description: ADOP Location: 2473-4909 bp Feature: domain Description: ADOP Location: 2473-4909 bp Feature: gene Location: 5250-5639 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 5268-5628 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 5268-5628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ADOP (TIGR03434), PIN_VapC4-5_FitB-like (cd18754)

Seq: PMVV01000136.1 Bryobacterales bacterium isolate bog_159 73.20110700_S2D.32_contig_9306, whole genome shotgun sequence (14532 bp)
Overview 1 RT 1: 11538-14525 bp Neighborhood of RT #1 [11538, 14530] Csm3_III-A Csm4_III-A Csm4_III-A RVT-CRISPR Cas_Cas1 Feature: gene Location: 11538-12269 bp Feature: domain Description: Csm3_III-A Location: 11613-12252 bp Feature: domain Description: Csm3_III-A Location: 11613-12 2 52 bp Feature: gene Location: 12266-13171 bp Feature: domain Description: Csm4_III-A Location: 12287-12455 bp Feature: domain Description: Csm4_III-A Location: 12 2 87-12 455 bp Feature: domain Description: Csm4_III-A Location: 12611-13142 bp Feature: domain Description: Csm4_III-A Location: 12 611-13142 bp Feature: gene Location: 13178-14530 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13382-13976 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13382 -13976 bp Feature: domain Description: Cas_Cas1 Location: 14195-14525 bp Feature: domain Description: Cas_Cas1 Location: 14195-1452 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csm3_III-A (cd09684), Csm4_III-A (cl23831), RVT-CRISPR, Cas_Cas1 (pfam01867)