myRT

myRT report for GCA_003166855.1_20110700_P3D

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Seq: PMUM01000070.1 Acidobacteriaceae bacterium isolate palsa_142 73.20110700_P3D.7_contig_13597, whole genome shotgun sequence (24296 bp)
Overview 1 RT 1: 365-4492 bp Neighborhood of RT #1 [365, 4575] RVT-UG12 HTH_17 XerC Feature: gene Location: 365-580 bp Feature: gene Location: 747-1106 bp Feature: gene Location: 1130-2776 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1541-1961 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 541 -1 961 bp Feature: gene Location: 2921-3334 bp Feature: domain Description: HTH_17 Location: 3080-3245 bp Feature: domain Description: HTH_1 7 Location: 3080-3245 bp Feature: gene Location: 3331-4575 bp Feature: domain Description: XerC Location: 3688-4492 bp Feature: domain Description: XerC Location: 3688-4492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12, HTH_17 (pfam12728), XerC (COG4973)

Seq: PMUM01000290.1 Acidobacteriaceae bacterium isolate palsa_142 73.20110700_P3D.7_contig_33488, whole genome shotgun sequence (3705 bp)
Overview 1 RT 1: 1-3145 bp Neighborhood of RT #1 [1, 3213] DusA RVT-Retrons metallo-hydrolase-like_MBL-fold Feature: gene Location: 1-336 bp Feature: domain Description: DusA Location: 28-247 bp Feature: domain Description: DusA Location: 2 8-2 47 bp Feature: gene Location: 341-1672 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 797-1439 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 797-1439 bp Feature: gene Location: 1924-2367 bp Feature: gene Location: 2374-3213 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 2407-3145 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 2 407-3145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DusA (COG0042), RVT-Retrons, metallo-hydrolase-like_MBL-fold (cl23716)

Seq: PMUM01000223.1 Acidobacteriaceae bacterium isolate palsa_142 73.20110700_P3D.7_contig_4746, whole genome shotgun sequence (18277 bp)
Overview 1 RT 1: 16184-18129 bp Neighborhood of RT #1 [16184, 18275] RVT-GII GIIM Feature: gene Location: 16184-16456 bp Feature: gene Location: 16551-16772 bp Feature: gene Location: 16899-18275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17244-17862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17244-17862 bp Feature: domain Description: GIIM Note: maturase Location: 17913-18129 bp Feature: domain Description: GIIM Note: maturase Location: 17913 -18129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PMUM01000065.1 Acidobacteriaceae bacterium isolate palsa_142 73.20110700_P3D.7_contig_5454, whole genome shotgun sequence (4092 bp)
Overview 1 RT 1: 185-4090 bp Neighborhood of RT #1 [185, 4089] VanZ RVT-GII COG5368 Feature: gene Location: 185-652 bp Feature: domain Description: VanZ Location: 206-635 bp Feature: domain Description: VanZ Location: 206-635 bp Feature: gene Location: 754-945 bp Feature: gene Location: 1004-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1496-2186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 96-2186 bp Feature: gene Location: 2962-4089 bp Feature: domain Description: COG5368 Location: 3910-4090 bp Feature: domain Description: COG5368 Location: 3910-4 090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VanZ (pfam04892), RVT-GII, COG5368 (Uncharacterized protein )