myRT

myRT report for GCA_003166975.1_20110700_P3D

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Seq: PMUJ01000020.1 Acidobacteriaceae bacterium isolate palsa_140 73.20110700_P3D.20_contig_3780, whole genome shotgun sequence (9143 bp)
Overview 1 RT 1: 6648-8607 bp Neighborhood of RT #1 [6648, 9050] HTH_32 DDE_3 RVT-G2L4 Feature: gene Location: 6648-6860 bp Feature: domain Description: HTH_32 Location: 6660-6798 bp Feature: domain Description: HTH_32 Location: 6660-6798 bp Feature: gene Location: 6877-7506 bp Feature: domain Description: DDE_3 Location: 6931-7384 bp Feature: domain Description: DDE_3 Location: 6931 -7384 bp Feature: gene Location: 8010-9050 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 8019-8607 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 801 9-8607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), DDE_3 (pfam13358), RVT-G2L4

Seq: PMUJ01000537.1 Acidobacteriaceae bacterium isolate palsa_140 73.20110700_P3D.20_contig_5468, whole genome shotgun sequence (12310 bp)
Overview 1 RT 1: 9044-11793 bp Neighborhood of RT #1 [9044, 12161] RVT-GII Feature: gene Location: 9044-9718 bp Feature: gene Location: 10660-11073 bp Feature: gene Location: 11163-12161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11169-11793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11169-11793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PMUJ01000270.1 Acidobacteriaceae bacterium isolate palsa_140 73.20110700_P3D.20_contig_7316, whole genome shotgun sequence (7027 bp)
Overview 1 RT 1: 4883-6740 bp Neighborhood of RT #1 [4883, 7012] PRK05710 RVT-Retrons Feature: gene Location: 4883-5851 bp Feature: domain Description: PRK05710 Location: 4928-5789 bp Feature: domain Description: PRK05710 Location: 4928-5789 bp Feature: gene Location: 5998-6162 bp Feature: gene Location: 6533-7012 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6539-6740 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 653 9-6740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05710 (tRNA glutamyl-Q(34) synthetase GluQRS), RVT-Retrons

Seq: PMUJ01000268.1 Acidobacteriaceae bacterium isolate palsa_140 73.20110700_P3D.20_contig_9651, whole genome shotgun sequence (2938 bp)
Overview 1 RT 1: 3-2937 bp Neighborhood of RT #1 [3, 2936] RVT-GII CheY EAL Feature: gene Location: 3-1355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-978 bp Feature: gene Location: 1704-2936 bp Feature: domain Description: CheY Location: 1878-2238 bp Feature: domain Description: CheY Location: 1878-2238 bp Feature: domain Description: EAL Location: 2268-2937 bp Feature: domain Description: EAL Location: 2268-2937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, CheY (COG0784), EAL (smart00052)