myRT

myRT report for GCA_003167275.1_20110700_P2D

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Seq: PMTT01000106.1 Bryobacterales bacterium isolate palsa_130 73.20110700_P2D.82_contig_140361, whole genome shotgun sequence (3516 bp)
Overview 1 RT 1: 967-3512 bp Neighborhood of RT #1 [967, 3514] MviM prsA RVT-GII Feature: gene Location: 967-1977 bp Feature: domain Description: MviM Location: 970-1975 bp Feature: domain Description: MviM Location: 970-1 975 bp Feature: gene Location: 2159-3178 bp Feature: domain Description: prsA Location: 2225-3143 bp Feature: domain Description: prsA Location: 2225-31 43 bp Feature: gene Location: 3260-3514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3404-3512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3404-351 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), prsA (PRK04405), RVT-GII

Seq: PMTT01000236.1 Bryobacterales bacterium isolate palsa_130 73.20110700_P2D.82_contig_14048, whole genome shotgun sequence (5023 bp)
Overview 1 RT 1: 175-4790 bp Neighborhood of RT #1 [175, 4790] YeaQ Cas2_I_II_III RVT-CRISPR Cas_Cas1 TIGR02710 Feature: gene Location: 175-417 bp Feature: domain Description: YeaQ Location: 184-412 bp Feature: domain Description: YeaQ Location: 184-412 bp Feature: gene Location: 1678-1875 bp Feature: domain Description: Cas2_I_II_III Location: 1684-1840 bp Feature: domain Description: Cas2 _I_II_III Location: 1684-1840 bp Feature: gene Location: 1965-3818 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2208-2802 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 2 08-2 802 bp Feature: domain Description: Cas_Cas1 Location: 3027-3591 bp Feature: domain Description: Cas_Cas1 Location: 302 7-3591 bp Feature: gene Location: 4014-4481 bp Feature: domain Description: TIGR02710 Location: 4248-4431 bp Feature: domain Description: TIGR02 710 Location: 42 48-4431 bp Feature: gene Location: 4626-4790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeaQ (COG2261), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas_Cas1 (pfam01867), TIGR02710 (CRISPR-associated protein, TIGR02710 family)

Seq: PMTT01000117.1 Bryobacterales bacterium isolate palsa_130 73.20110700_P2D.82_contig_14604, whole genome shotgun sequence (3215 bp)
Overview 1 RT 1: 1-3018 bp Neighborhood of RT #1 [1, 3018] RVT-CRISPR-like Feature: gene Location: 1-417 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 211-418 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 211-418 bp Feature: gene Location: 527-2230 bp Feature: gene Location: 2227-3018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: PMTT01000452.1 Bryobacterales bacterium isolate palsa_130 73.20110700_P2D.82_contig_3563, whole genome shotgun sequence (17854 bp)
Overview 1 RT 1: 6891-10007 bp Neighborhood of RT #1 [6891, 10007] MazF RVT-Retrons PIN_VapC4-5_FitB-like Feature: gene Location: 6891-7223 bp Feature: domain Description: MazF Location: 6894-7206 bp Feature: domain Description: MazF Location: 6894 -7206 bp Feature: gene Location: 7153-7368 bp Feature: gene Location: 7543-9528 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7930-8560 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7930-8560 bp Feature: gene Location: 9383-9766 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 9401-9686 bp Feature: domain Description: PIN_VapC4 -5_FitB-like Location: 94 01-9686 bp Feature: gene Location: 9804-10007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MazF (COG2337), RVT-Retrons, PIN_VapC4-5_FitB-like (cd18754)

Seq: PMTT01000390.1 Bryobacterales bacterium isolate palsa_130 73.20110700_P2D.82_contig_4499, whole genome shotgun sequence (37000 bp)
Overview 1 RT 1: 8054-11320 bp Neighborhood of RT #1 [8054, 11320] RVT-Retrons HTH_XRE Feature: gene Location: 8054-8608 bp Feature: gene Location: 8672-9229 bp Feature: gene Location: 9767-10789 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9938-10502 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9938-105 02 bp Feature: gene Location: 10740-11039 bp Feature: domain Description: HTH_XRE Location: 10752-10920 bp Feature: domain Description: HTH_XRE Location: 1075 2-10920 bp Feature: gene Location: 11075-11320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: PMTT01000505.1 Bryobacterales bacterium isolate palsa_130 73.20110700_P2D.82_contig_6598, whole genome shotgun sequence (6767 bp)
Overview 1 RT 1: 3-6760 bp Neighborhood of RT #1 [3, 6765] PSD3 PSD5 PSD4 PSCyt3 RVT-Retrons ADOP COG1350 Feature: gene Location: 3-1991 bp Feature: domain Description: PSD3 Location: 369-558 bp Feature: domain Description: PSD3 Location: 36 9-558 bp Feature: domain Description: PSD5 Location: 1122-1302 bp Feature: domain Description: PSD5 Location: 1122-1302 bp Feature: domain Description: PSD4 Location: 1344-1725 bp Feature: domain Description: PSD4 Location: 1344-1725 bp Feature: domain Description: PSCyt3 Location: 1779-1989 bp Feature: domain Description: PSCyt3 Location: 1779-1989 bp Feature: gene Location: 2189-3457 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2582-3221 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2582-3221 bp Feature: gene Location: 3909-6371 bp Feature: domain Description: ADOP Location: 3921-6369 bp Feature: domain Description: ADOP Location: 3921-6 36 9 bp Feature: gene Location: 6619-6765 bp Feature: domain Description: COG1350 Location: 6634-6760 bp Feature: domain Description: COG1350 Location: 6 6 34-6 76 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PSD3 (pfam07626), PSD5 (pfam07637), PSD4 (pfam07631), PSCyt3 (pfam07627), RVT-Retrons, ADOP (TIGR03434), COG1350 (Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) )