myRT

myRT report for GCA_003167495.1_20110700_P1S

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Seq: PMSX01000250.1 Bryobacterales bacterium isolate palsa_124 73.20110700_P1S.21_contig_12582, whole genome shotgun sequence (15833 bp)
Overview 1 RT 1: 4192-9282 bp Neighborhood of RT #1 [4192, 9282] group_II_RT_mat RVT-UG13 TIR_2 AAA_16 Feature: gene Location: 4192-4350 bp Feature: gene Location: 4590-4937 bp Feature: gene Location: 5020-6918 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5143-5380 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 51 43-5380 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 5494-5965 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 5494-5965 bp Feature: gene Location: 7082-8917 bp Feature: domain Description: TIR_2 Location: 7127-7457 bp Feature: domain Description: TIR_2 Location: 71 27-7457 bp Feature: domain Description: AAA_16 Location: 7763-8282 bp Feature: domain Description: AAA_1 6 Location: 7763-8282 bp Feature: gene Location: 9007-9282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-UG13, TIR_2 (pfam13676), AAA_16 (pfam13191)

Seq: PMSX01000226.1 Bryobacterales bacterium isolate palsa_124 73.20110700_P1S.21_contig_2564, whole genome shotgun sequence (6130 bp)
Overview 1 RT 1: 1599-3436 bp Neighborhood of RT #1 [1599, 3531] DUF5372 RVT-CRISPR-like HTH_17 HTH_17 GIIM Feature: gene Location: 1599-1937 bp Feature: gene Location: 1974-2267 bp Feature: domain Description: DUF5372 Location: 1992-2220 bp Feature: domain Description: DUF5372 Location: 1992 -2 2 2 0 bp Feature: gene Location: 2324-2470 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2327-2423 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 32 7-2 42 3 bp Feature: gene Location: 2508-3020 bp Feature: domain Description: HTH_17 Location: 2685-2808 bp Feature: domain Description: HTH_17 Location: 2 685-2 808 bp Feature: domain Description: HTH_17 Location: 2883-2979 bp Feature: domain Description: HTH_17 Location: 2 883-2 979 bp Feature: gene Location: 3103-3531 bp Feature: domain Description: GIIM Note: maturase Location: 3229-3436 bp Feature: domain Description: GIIM Note: maturase Location: 32 2 9-3436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-CRISPR, HTH_17 (pfam12728), GIIM (pfam08388)

Seq: PMSX01000069.1 Bryobacterales bacterium isolate palsa_124 73.20110700_P1S.21_contig_5130, whole genome shotgun sequence (44442 bp)
Overview 1 RT 1: 10671-17538 bp Neighborhood of RT #1 [10671, 17828] PQQ_ABC_repeats PQQ_ABC_repeats beta_rpt_yvtn RVT-Retrons Cytochrome_CBB3 PSD3 PSD5 PSD4 PSCyt3 PSD2 HXXSHH Feature: gene Location: 10671-11738 bp Feature: domain Description: PQQ_ABC_repeats Location: 10746-11199 bp Feature: domain Description: PQQ_ABC_repeats Location: 10746-11199 bp Feature: domain Description: PQQ_ABC_repeats Location: 11313-11517 bp Feature: domain Description: PQQ_ABC_repeats Location: 113 13 -11517 bp Feature: domain Description: beta_rpt_yvtn Location: 11604-11721 bp Feature: domain Description: beta_rpt_yvtn Location: 11604-11721 bp Feature: gene Location: 11755-12282 bp Feature: gene Location: 12258-13577 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12714-13332 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12714-13 3 3 2 bp Feature: gene Location: 14095-16485 bp Feature: domain Description: Cytochrome_CBB3 Location: 14239-14449 bp Feature: domain Description: Cytochrome_CBB3 Location: 1423 9-14449 bp Feature: domain Description: PSD3 Location: 14512-14701 bp Feature: domain Description: PSD3 Location: 14512-14701 bp Feature: domain Description: PSD5 Location: 15190-15373 bp Feature: domain Description: PSD5 Location: 15190-153 73 bp Feature: domain Description: PSD4 Location: 15415-15796 bp Feature: domain Description: PSD4 Location: 15415-15796 bp Feature: domain Description: PSCyt3 Location: 15850-16141 bp Feature: domain Description: PSCyt3 Location: 15850-16141 bp Feature: domain Description: PSD2 Location: 16183-16405 bp Feature: domain Description: PSD2 Location: 16183 -16405 bp Feature: gene Location: 16527-17828 bp Feature: domain Description: HXXSHH Location: 16617-17538 bp Feature: domain Description: HXXSHH Location: 16617-1753 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PQQ_ABC_repeats (TIGR03866), beta_rpt_yvtn (TIGR02276), RVT-Retrons, Cytochrome_CBB3 (pfam13442), PSD3 (pfam07626), PSD5 (pfam07637), PSD4 (pfam07631), PSCyt3 (pfam07627), PSD2 (pfam07624), HXXSHH (pfam07586)

Seq: PMSX01000251.1 Bryobacterales bacterium isolate palsa_124 73.20110700_P1S.21_contig_8195, whole genome shotgun sequence (54879 bp)
Overview 1 RT 1: 20720-24467 bp Neighborhood of RT #1 [20720, 24467] RVT-GII GIIM Feature: gene Location: 20720-21037 bp Feature: gene Location: 21107-21412 bp Feature: gene Location: 21576-23483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22416-23058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224 16-23058 bp Feature: domain Description: GIIM Note: maturase Location: 23121-23343 bp Feature: domain Description: GIIM Note: maturase Location: 23121-2334 3 bp Feature: gene Location: 23600-23980 bp Feature: gene Location: 24144-24467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)