myRT

myRT report for GCA_003167545.1_20110700_P1M

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Seq: PMSO01000529.1 Acidobacteriaceae bacterium isolate palsa_121 73.20110700_P1M.10_contig_2293, whole genome shotgun sequence (20391 bp)
Overview 1 RT 1: 16253-20280 bp Neighborhood of RT #1 [16253, 20288] Couple_hipA HipA_C RVT-Retrons Phd PIN_RfVapC1-like Feature: gene Location: 16253-16615 bp Feature: gene Location: 16949-18175 bp Feature: domain Description: Couple_hipA Location: 17003-17306 bp Feature: domain Description: Couple_hipA Location: 1 7003-1 7306 bp Feature: domain Description: HipA_C Location: 17438-18092 bp Feature: domain Description: HipA_C Location: 1 7438-1 8092 bp Feature: gene Location: 18269-18676 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18464-18596 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8464-1 8596 bp Feature: gene Location: 19606-19884 bp Feature: domain Description: Phd Location: 19636-19765 bp Feature: domain Description: Phd Location: 1 9636-1 9765 bp Feature: gene Location: 19875-20288 bp Feature: domain Description: PIN_RfVapC1-like Location: 19881-20280 bp Feature: domain Description: PIN_RfVapC1 -like Location: 1 9881 -20280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Couple_hipA (pfam13657), HipA_C (pfam07804), RVT-Retrons, Phd (COG4118), PIN_RfVapC1-like (cd18733)

Seq: PMSO01000690.1 Acidobacteriaceae bacterium isolate palsa_121 73.20110700_P1M.10_contig_23890, whole genome shotgun sequence (6989 bp)
Overview 1 RT 1: 3567-6810 bp Neighborhood of RT #1 [3567, 6905] PuuD RVT-GII GIIM Feature: gene Location: 3567-4376 bp Feature: domain Description: PuuD Location: 3636-4332 bp Feature: domain Description: PuuD Location: 3636-4332 bp Feature: gene Location: 4538-4786 bp Feature: gene Location: 5658-6905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5868-6528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5868-652 8 bp Feature: domain Description: GIIM Note: maturase Location: 6603-6810 bp Feature: domain Description: GIIM Note: maturase Location: 6603-6810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PuuD (COG2071), RVT-GII, GIIM (pfam08388)

Seq: PMSO01000325.1 Acidobacteriaceae bacterium isolate palsa_121 73.20110700_P1M.10_contig_3063, whole genome shotgun sequence (9429 bp)
Overview 1 RT 1: 7774-9048 bp Neighborhood of RT #1 [7774, 9428] YybH RVT-GII Feature: gene Location: 7774-8112 bp Feature: gene Location: 8280-8489 bp Feature: domain Description: YybH Location: 8292-8430 bp Feature: domain Description: YybH Location: 8292-843 0 bp Feature: gene Location: 8667-9428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8670-9048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8670-9048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YybH (COG4319), RVT-GII

Seq: PMSO01000131.1 Acidobacteriaceae bacterium isolate palsa_121 73.20110700_P1M.10_contig_89896, whole genome shotgun sequence (3135 bp)
Overview 1 RT 1: 3-2947 bp Neighborhood of RT #1 [3, 2947] RVT-GII PinE Zn_ribbon_recom Feature: gene Location: 3-389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-378 bp Feature: gene Location: 379-2472 bp Feature: domain Description: PinE Location: 418-1051 bp Feature: domain Description: PinE Location: 4 18-1051 bp Feature: domain Description: Zn_ribbon_recom Location: 1375-1549 bp Feature: domain Description: Zn_ribbon_recom Location: 1375-154 9 bp Feature: gene Location: 2609-2947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408)