myRT

myRT report for GCA_003167615.1_20110700_P1D

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Seq: PMSK01000069.1 Acidimicrobiaceae bacterium isolate palsa_502 73.20110700_P1D.14_contig_11888, whole genome shotgun sequence (6937 bp)
Overview 1 RT 1: 3-4082 bp Neighborhood of RT #1 [3, 4082] CypX RVT-GII GIIM Feature: gene Location: 3-731 bp Feature: domain Description: CypX Location: 42-732 bp Feature: domain Description: CypX Location: 42-732 bp Feature: gene Location: 842-2185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1163-1790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 63-1 790 bp Feature: domain Description: GIIM Note: maturase Location: 1880-2093 bp Feature: domain Description: GIIM Note: maturase Location: 1 880-2093 bp Feature: gene Location: 2829-3518 bp Feature: gene Location: 3567-4082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CypX (COG2124), RVT-GII, GIIM (pfam08388)

Seq: PMSK01000328.1 Acidimicrobiaceae bacterium isolate palsa_502 73.20110700_P1D.14_contig_2562, whole genome shotgun sequence (11832 bp)
Overview 1 RT 1: 3803-8210 bp Neighborhood of RT #1 [3803, 8503] COG2865 RVT-GII GIIM NERD Feature: gene Location: 3803-4009 bp Feature: gene Location: 4060-5346 bp Feature: domain Description: COG2865 Location: 4159-4558 bp Feature: domain Description: COG2 865 Location: 4159-4558 bp Feature: gene Location: 5688-6962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5904-6564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5904-6564 bp Feature: domain Description: GIIM Note: maturase Location: 6654-6867 bp Feature: domain Description: GIIM Note: maturase Location: 6654-6867 bp Feature: gene Location: 6630-7376 bp Feature: gene Location: 7688-8503 bp Feature: domain Description: NERD Location: 7964-8210 bp Feature: domain Description: NERD Location: 7964-82 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-GII, GIIM (pfam08388), NERD (pfam08378)

Seq: PMSK01000216.1 Acidimicrobiaceae bacterium isolate palsa_502 73.20110700_P1D.14_contig_6258, whole genome shotgun sequence (14305 bp)
Overview 1 RT 1: 2435-7307 bp Neighborhood of RT #1 [2435, 7321] PRK00174 RVT-GII Cauli_AT Feature: gene Location: 2435-4540 bp Feature: domain Description: PRK00174 Location: 2558-4457 bp Feature: domain Description: PRK00174 Location: 2558-4457 bp Feature: gene Location: 5199-5918 bp Feature: gene Location: 5937-6548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6240-6543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6240-6543 bp Feature: gene Location: 6964-7095 bp Feature: gene Location: 7163-7321 bp Feature: domain Description: Cauli_AT Location: 7187-7307 bp Feature: domain Description: Cauli_AT Location: 7187-73 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00174 (acetyl-CoA synthetase; Provisional), RVT-GII, Cauli_AT (pfam03233)