myRT

myRT report for GCA_003167655.1_20110700_S3M

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Seq: PMWS01000453.1 Acidobacteriaceae bacterium isolate bog_167 73.20110700_S3M.27_contig_1030, whole genome shotgun sequence (30399 bp)
Overview 1 RT 1: 245-4245 bp Neighborhood of RT #1 [245, 4316] RVT-GII Lactonase Lactonase Lactonase Lactonase Lactonase Feature: gene Location: 245-1234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 575-1010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 575-1 01 0 bp Feature: gene Location: 1701-2927 bp Feature: domain Description: Lactonase Location: 1800-2028 bp Feature: domain Description: Lactonase Location: 1 800-2028 bp Feature: domain Description: Lactonase Location: 2409-2682 bp Feature: domain Description: Lactonase Location: 2409-2682 bp Feature: domain Description: Lactonase Location: 2721-2847 bp Feature: domain Description: Lactonase Location: 2721 -2847 bp Feature: gene Location: 3063-4316 bp Feature: domain Description: Lactonase Location: 3213-3543 bp Feature: domain Description: Lactonase Location: 321 3-3543 bp Feature: domain Description: Lactonase Location: 3945-4245 bp Feature: domain Description: Lactonase Location: 3945-4245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Lactonase (pfam10282)

Seq: PMWS01000150.1 Acidobacteriaceae bacterium isolate bog_167 73.20110700_S3M.27_contig_1195, whole genome shotgun sequence (45136 bp)
Overview 1 RT 1: 21490-30018 bp Neighborhood of RT #1 [21490, 30018] ADOP RVT-GII Pro-peptidase_S53 Peptidases_S53 Big_3_5 Big_3_5 Big_3_5 Feature: gene Location: 21490-21657 bp Feature: gene Location: 21871-24300 bp Feature: domain Description: ADOP Location: 21883-24298 bp Feature: domain Description: ADOP Location: 2 1883-2 42 98 bp Feature: gene Location: 24578-24958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24842-24935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4842 -2 4935 bp Feature: gene Location: 25204-28965 bp Feature: domain Description: Pro-peptidase_S53 Location: 25570-25933 bp Feature: domain Description: Pro-peptidase_S53 Location: 2 5570-2 5933 bp Feature: domain Description: Peptidases_S53 Location: 26026-27388 bp Feature: domain Description: Peptidases_S53 Location: 2 602 6-2 7388 bp Feature: domain Description: Big_3_5 Location: 27469-27766 bp Feature: domain Description: Big_3_5 Location: 2 7469-2 7766 bp Feature: domain Description: Big_3_5 Location: 27799-28081 bp Feature: domain Description: Big_3_5 Location: 2 7799-2 8081 bp Feature: domain Description: Big_3_5 Location: 28174-28405 bp Feature: domain Description: Big_3_5 Location: 2 8174-2 8405 bp Feature: gene Location: 29404-30018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ADOP (TIGR03434), RVT-GII, Pro-peptidase_S53 (cl07889), Peptidases_S53 (cd04056), Big_3_5 (pfam16640)

Seq: PMWS01000305.1 Acidobacteriaceae bacterium isolate bog_167 73.20110700_S3M.27_contig_13354, whole genome shotgun sequence (17489 bp)
Overview 1 RT 1: 1-3153 bp Neighborhood of RT #1 [1, 3845] RVT-GII GT4_mannosyltransferase-like CarboxypepD_reg Feature: gene Location: 1-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-898 bp Feature: gene Location: 1286-2623 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 1418-2528 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 1418-2528 bp Feature: gene Location: 2751-3845 bp Feature: domain Description: CarboxypepD_reg Location: 2925-3153 bp Feature: domain Description: CarboxypepD_reg Location: 2925-3 153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GT4_mannosyltransferase-like (cd03822), CarboxypepD_reg (pfam13620)

Seq: PMWS01000389.1 Acidobacteriaceae bacterium isolate bog_167 73.20110700_S3M.27_contig_15762, whole genome shotgun sequence (4587 bp)
Overview 1 RT 1: 547-3329 bp Neighborhood of RT #1 [547, 3329] AbiTii RVT-Retrons HTH_XRE Feature: gene Location: 547-855 bp Feature: gene Location: 852-1778 bp Feature: domain Description: AbiTii Location: 858-1395 bp Feature: domain Description: AbiTii Location: 858-1395 bp Feature: gene Location: 1801-2766 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1996-2524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1996-2524 bp Feature: gene Location: 2720-3055 bp Feature: domain Description: HTH_XRE Location: 2735-2894 bp Feature: domain Description: HTH_XRE Location: 2735-2894 bp Feature: gene Location: 3120-3329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiTii (pfam18864), RVT-Retrons, HTH_XRE (smart00530)

Seq: PMWS01000297.1 Acidobacteriaceae bacterium isolate bog_167 73.20110700_S3M.27_contig_16587, whole genome shotgun sequence (16416 bp)
Overview 1 RT 1: 5580-10223 bp Neighborhood of RT #1 [5580, 10223] TraI_TIGR AAA_30 TraI_TIGR TraI_TIGR DNA_polB_like1_exo RVT-Retrons HipB Feature: gene Location: 5580-7934 bp Feature: domain Description: TraI_TIGR Location: 5592-6390 bp Feature: domain Description: TraI_TIGR Location: 5 5 92-6390 bp Feature: domain Description: AAA_30 Location: 6534-7089 bp Feature: domain Description: AAA_30 Location: 65 34-7089 bp Feature: domain Description: TraI_TIGR Location: 7092-7338 bp Feature: domain Description: TraI_TIGR Location: 7092-7338 bp Feature: domain Description: TraI_TIGR Location: 7365-7893 bp Feature: domain Description: TraI_TIGR Location: 7365 -7893 bp Feature: gene Location: 8070-8741 bp Feature: domain Description: DNA_polB_like1_exo Location: 8118-8613 bp Feature: domain Description: DNA_polB_like1_exo Location: 8118-8613 bp Feature: gene Location: 8738-9643 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8879-9401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8879-9401 bp Feature: gene Location: 9627-9938 bp Feature: domain Description: HipB Location: 9636-9840 bp Feature: domain Description: HipB Location: 9636-9840 bp Feature: gene Location: 9969-10223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraI_TIGR (TIGR02760), AAA_30 (pfam13604), DNA_polB_like1_exo (cd05782), RVT-Retrons, HipB (COG1396)

Seq: PMWS01000052.1 Acidobacteriaceae bacterium isolate bog_167 73.20110700_S3M.27_contig_16723, whole genome shotgun sequence (7609 bp)
Overview 1 RT 1: 1-2449 bp Neighborhood of RT #1 [1, 2514] RVT-GII GIIM HTH_Tnp_1 TnpB_IS66 Feature: gene Location: 1-168 bp Feature: gene Location: 252-1619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585-1200 bp Feature: domain Description: GIIM Note: maturase Location: 1257-1461 bp Feature: domain Description: GIIM Note: maturase Location: 1257-146 1 bp Feature: gene Location: 1769-2104 bp Feature: domain Description: HTH_Tnp_1 Location: 1829-1931 bp Feature: domain Description: HTH_Tnp_1 Location: 1829-1931 bp Feature: gene Location: 2101-2514 bp Feature: domain Description: TnpB_IS66 Location: 2152-2449 bp Feature: domain Description: TnpB_IS6 6 Location: 2152-2449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), TnpB_IS66 (pfam05717)

Seq: PMWS01000032.1 Acidobacteriaceae bacterium isolate bog_167 73.20110700_S3M.27_contig_28349, whole genome shotgun sequence (5051 bp)
Overview 1 RT 1: 2172-5002 bp Neighborhood of RT #1 [2172, 5002] RVT-GII Feature: gene Location: 2172-2816 bp Feature: gene Location: 2860-3213 bp Feature: gene Location: 3542-4639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4247 bp Feature: gene Location: 4712-5002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PMWS01000454.1 Acidobacteriaceae bacterium isolate bog_167 73.20110700_S3M.27_contig_35342, whole genome shotgun sequence (2981 bp)
Overview 1 RT 1: 1093-2572 bp Neighborhood of RT #1 [1093, 2979] RVT-GII Feature: gene Location: 1093-1287 bp Feature: gene Location: 1814-1993 bp Feature: gene Location: 2053-2979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068-2572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068 -2572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PMWS01000003.1 Acidobacteriaceae bacterium isolate bog_167 73.20110700_S3M.27_contig_37028, whole genome shotgun sequence (4598 bp)
Overview 1 RT 1: 3-4513 bp Neighborhood of RT #1 [3, 4596] AsnB RVT-GII GIIM Soli_Soli_TIGR03435 TlpA_like_ScsD_MtbDsbE Feature: gene Location: 3-395 bp Feature: domain Description: AsnB Location: 6-393 bp Feature: domain Description: AsnB Location: 6-39 3 bp Feature: gene Location: 642-1973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 39 -1605 bp Feature: domain Description: GIIM Note: maturase Location: 1674-1887 bp Feature: domain Description: GIIM Note: maturase Location: 1674-1887 bp Feature: gene Location: 2953-3975 bp Feature: domain Description: Soli_Soli_TIGR03435 Location: 3202-3973 bp Feature: domain Description: Soli_Soli_TIGR03435 Location: 3202-39 73 bp Feature: gene Location: 4168-4596 bp Feature: domain Description: TlpA_like_ScsD_MtbDsbE Location: 4219-4513 bp Feature: domain Description: TlpA_like_ScsD_MtbDsbE Location: 4219 -4513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AsnB (COG0367), RVT-GII, GIIM (pfam08388), Soli_Soli_TIGR03435, TlpA_like_ScsD_MtbDsbE (cd03011)

Seq: PMWS01000085.1 Acidobacteriaceae bacterium isolate bog_167 73.20110700_S3M.27_contig_5564, whole genome shotgun sequence (12148 bp)
Overview 1 RT 1: 9806-11839 bp Neighborhood of RT #1 [9806, 12075] RVT-Retrons Feature: gene Location: 9806-10030 bp Feature: gene Location: 10591-10806 bp Feature: gene Location: 11137-12075 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11305-11839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11305-11839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons