myRT

myRT report for GCA_003167725.1_20110700_S2M

Download annotations/find similar RTs

Seq: PMWH01000662.1 Acidobacteriaceae bacterium isolate bog_162 73.20110700_S2M.20_contig_10863, whole genome shotgun sequence (3130 bp)
Overview 1 RT 1: 1148-2833 bp Neighborhood of RT #1 [1148, 3045] RVT_N RVT-GII GIIM Feature: gene Location: 1148-1285 bp Feature: gene Location: 1349-1549 bp Feature: gene Location: 1546-3045 bp Feature: domain Description: RVT_N Location: 1612-1855 bp Feature: domain Description: RVT_N Location: 1 61 2-1 855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1900-2545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 900-2545 bp Feature: domain Description: GIIM Note: maturase Location: 2602-2833 bp Feature: domain Description: GIIM Note: maturase Location: 2602-2833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PMWH01000109.1 Acidobacteriaceae bacterium isolate bog_162 73.20110700_S2M.20_contig_112758, whole genome shotgun sequence (2530 bp)
Overview 1 RT 1: 924-2493 bp Neighborhood of RT #1 [924, 2528] RVT-GII Feature: gene Location: 924-1052 bp Feature: gene Location: 1792-1971 bp Feature: gene Location: 2031-2528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2046-2493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 046-2 493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PMWH01000744.1 Acidobacteriaceae bacterium isolate bog_162 73.20110700_S2M.20_contig_14209, whole genome shotgun sequence (9963 bp)
Overview 1 RT 1: 91-6027 bp Neighborhood of RT #1 [91, 6027] ADOP RVT-GII Pro-peptidase_S53 Peptidases_S53 Big_3_5 Big_3_5 Big_3_5 Feature: gene Location: 91-309 bp Feature: domain Description: ADOP Location: 103-250 bp Feature: domain Description: ADOP Location: 103 -250 bp Feature: gene Location: 587-967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851-944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851-944 bp Feature: gene Location: 1213-4974 bp Feature: domain Description: Pro-peptidase_S53 Location: 1579-1942 bp Feature: domain Description: Pro-peptidase_S53 Location: 1579-1942 bp Feature: domain Description: Peptidases_S53 Location: 2035-3397 bp Feature: domain Description: Peptidases_S53 Location: 203 5-3 3 97 bp Feature: domain Description: Big_3_5 Location: 3478-3775 bp Feature: domain Description: Big_3 _5 Location: 3 478-3 775 bp Feature: domain Description: Big_3_5 Location: 3808-4090 bp Feature: domain Description: Big_3 _5 Location: 3 808-4090 bp Feature: domain Description: Big_3_5 Location: 4183-4414 bp Feature: domain Description: Big_3 _5 Location: 4183 -4414 bp Feature: gene Location: 5413-6027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ADOP (TIGR03434), RVT-GII, Pro-peptidase_S53 (cl07889), Peptidases_S53 (cd04056), Big_3_5 (pfam16640)

Seq: PMWH01000001.1 Acidobacteriaceae bacterium isolate bog_162 73.20110700_S2M.20_contig_17743, whole genome shotgun sequence (4584 bp)
Overview 1 RT 1: 1280-4062 bp Neighborhood of RT #1 [1280, 4062] HTH_XRE RVT-Retrons AbiTii Feature: gene Location: 1280-1489 bp Feature: gene Location: 1554-1889 bp Feature: domain Description: HTH_XRE Location: 1569-1728 bp Feature: domain Description: HTH_XRE Location: 1569-1728 bp Feature: gene Location: 1843-2808 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2038-2566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2038-2566 bp Feature: gene Location: 2831-3757 bp Feature: domain Description: AbiTii Location: 2837-3374 bp Feature: domain Description: AbiTii Location: 2837-3374 bp Feature: gene Location: 3754-4062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, AbiTii (pfam18864)

Seq: PMWH01000200.1 Acidobacteriaceae bacterium isolate bog_162 73.20110700_S2M.20_contig_1924, whole genome shotgun sequence (8371 bp)
Overview 1 RT 1: 3-3802 bp Neighborhood of RT #1 [3, 3903] RVT-GII SAM_SPASM_FxsB Feature: gene Location: 3-926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-927 bp Feature: gene Location: 1627-2673 bp Feature: gene Location: 2686-3903 bp Feature: domain Description: SAM_SPASM_FxsB Location: 2728-3802 bp Feature: domain Description: SAM_SPASM_FxsB Location: 2728-3802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SAM_SPASM_FxsB (TIGR04269)

Seq: PMWH01000224.1 Acidobacteriaceae bacterium isolate bog_162 73.20110700_S2M.20_contig_20352, whole genome shotgun sequence (18346 bp)
Overview 1 RT 1: 16345-18185 bp Neighborhood of RT #1 [16345, 18343] TnpB_IS66 HTH_Tnp_1 RVT-GII GIIM Feature: gene Location: 16345-16758 bp Feature: domain Description: TnpB_IS66 Location: 16396-16693 bp Feature: domain Description: TnpB_IS6 6 Location: 16 396 -16 6 93 bp Feature: gene Location: 16755-17090 bp Feature: domain Description: HTH_Tnp_1 Location: 16815-16917 bp Feature: domain Description: HTH_Tnp_1 Location: 16 815-16 917 bp Feature: gene Location: 17240-18343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17309-17924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17309-17924 bp Feature: domain Description: GIIM Note: maturase Location: 17981-18185 bp Feature: domain Description: GIIM Note: maturase Location: 17981-18185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388)

Seq: PMWH01000742.1 Acidobacteriaceae bacterium isolate bog_162 73.20110700_S2M.20_contig_21662, whole genome shotgun sequence (12148 bp)
Overview 1 RT 1: 74-2343 bp Neighborhood of RT #1 [74, 2343] RVT-Retrons Feature: gene Location: 74-1012 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 242-776 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 242-7 7 6 bp Feature: gene Location: 1343-1558 bp Feature: gene Location: 2119-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PMWH01000268.1 Acidobacteriaceae bacterium isolate bog_162 73.20110700_S2M.20_contig_4474, whole genome shotgun sequence (17358 bp)
Overview 1 RT 1: 3101-6494 bp Neighborhood of RT #1 [3101, 6535] HipB RVT-Retrons DNA_polB_like1_exo TraI_TIGR TraI_TIGR TraI_TIGR Feature: gene Location: 3101-3355 bp Feature: gene Location: 3386-3697 bp Feature: domain Description: HipB Location: 3395-3599 bp Feature: domain Description: HipB Location: 3395-3599 bp Feature: gene Location: 3681-4586 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3822-4344 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38 22-4344 bp Feature: gene Location: 4583-5254 bp Feature: domain Description: DNA_polB_like1_exo Location: 4631-5126 bp Feature: domain Description: DNA_polB_like1_exo Location: 4631-5126 bp Feature: gene Location: 5390-6535 bp Feature: domain Description: TraI_TIGR Location: 5426-5591 bp Feature: domain Description: TraI_TIGR Location: 5426-5591 bp Feature: domain Description: TraI_TIGR Location: 5624-5939 bp Feature: domain Description: TraI_TIGR Location: 5624-5939 bp Feature: domain Description: TraI_TIGR Location: 5966-6494 bp Feature: domain Description: TraI_TIGR Location: 5966-6494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-Retrons, DNA_polB_like1_exo (cd05782), TraI_TIGR (TIGR02760)

Seq: PMWH01000100.1 Acidobacteriaceae bacterium isolate bog_162 73.20110700_S2M.20_contig_5247, whole genome shotgun sequence (10846 bp)
Overview 1 RT 1: 6184-10490 bp Neighborhood of RT #1 [6184, 10660] Lactonase Lactonase Lactonase Lactonase Lactonase RVT-GII GIIM Feature: gene Location: 6184-7437 bp Feature: domain Description: Lactonase Location: 6334-6664 bp Feature: domain Description: Lactonase Location: 6334-6664 bp Feature: domain Description: Lactonase Location: 7066-7366 bp Feature: domain Description: Lactonase Location: 7066-7366 bp Feature: gene Location: 7573-8799 bp Feature: domain Description: Lactonase Location: 7672-7900 bp Feature: domain Description: Lactonase Location: 7672-79 00 bp Feature: domain Description: Lactonase Location: 8281-8554 bp Feature: domain Description: Lactonase Location: 8281-8554 bp Feature: domain Description: Lactonase Location: 8593-8719 bp Feature: domain Description: Lactonase Location: 859 3-8719 bp Feature: gene Location: 9266-10660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9596-10214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 59 6-10214 bp Feature: domain Description: GIIM Note: maturase Location: 10265-10490 bp Feature: domain Description: GIIM Note: maturase Location: 10265-1049 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lactonase (pfam10282), RVT-GII, GIIM (pfam08388)

Seq: PMWH01000230.1 Acidobacteriaceae bacterium isolate bog_162 73.20110700_S2M.20_contig_9597, whole genome shotgun sequence (12442 bp)
Overview 1 RT 1: 3-2867 bp Neighborhood of RT #1 [3, 3559] RVT-GII GT4_mannosyltransferase-like CarboxypepD_reg Feature: gene Location: 3-656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-657 bp Feature: gene Location: 1000-2337 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 1132-2242 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 1132-2242 bp Feature: gene Location: 2465-3559 bp Feature: domain Description: CarboxypepD_reg Location: 2639-2867 bp Feature: domain Description: CarboxypepD_reg Location: 2639-2867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GT4_mannosyltransferase-like (cd03822), CarboxypepD_reg (pfam13620)