myRT

myRT report for GCA_003167855.1_20110700_S1M

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Seq: PMVJ01000050.1 Acidobacteriaceae bacterium isolate bog_154 73.20110700_S1M.36_contig_1209, whole genome shotgun sequence (4049 bp)
Overview 1 RT 1: 2-3966 bp Neighborhood of RT #1 [2, 3966] RVT-GII GIIM Feature: gene Location: 2-1252 bp Feature: gene Location: 1357-2049 bp Feature: gene Location: 2392-3630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2590-3253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2590-3253 bp Feature: domain Description: GIIM Note: maturase Location: 3325-3529 bp Feature: domain Description: GIIM Note: maturase Location: 3325-3529 bp Feature: gene Location: 3805-3966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PMVJ01000220.1 Acidobacteriaceae bacterium isolate bog_154 73.20110700_S1M.36_contig_45772, whole genome shotgun sequence (3388 bp)
Overview 1 RT 1: 1-3294 bp Neighborhood of RT #1 [1, 3386] RVT-GII Gloeo_Verruco Gloeo_Verruco Gloeo_Verruco Gloeo_Verruco Gloeo_Verruco Gloeo_Verruco Gloeo_Verruco Gloeo_Verruco Feature: gene Location: 1-1020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-643 bp Feature: gene Location: 1168-2364 bp Feature: domain Description: Gloeo_Verruco Location: 1498-1573 bp Feature: domain Description: Gloeo_Verruco Location: 1498-1573 bp Feature: domain Description: Gloeo_Verruco Location: 1663-1735 bp Feature: domain Description: Gloeo_Verruco Location: 1663-1735 bp Feature: domain Description: Gloeo_Verruco Location: 1801-1867 bp Feature: domain Description: Gloeo_Verruco Location: 1801-1867 bp Feature: domain Description: Gloeo_Verruco Location: 1966-2047 bp Feature: domain Description: Gloeo_Verruco Location: 1966-2 047 bp Feature: domain Description: Gloeo_Verruco Location: 2140-2248 bp Feature: domain Description: Gloeo_Verruco Location: 2 140-2 2 48 bp Feature: gene Location: 2667-3386 bp Feature: domain Description: Gloeo_Verruco Location: 2850-2934 bp Feature: domain Description: Gloeo_Verruco Location: 2 850-2 934 bp Feature: domain Description: Gloeo_Verruco Location: 3024-3066 bp Feature: domain Description: Gloeo_Verruco Location: 302 4-3066 bp Feature: domain Description: Gloeo_Verruco Location: 3222-3294 bp Feature: domain Description: Gloeo_Verruco Location: 32 2 2 -32 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Gloeo_Verruco (TIGR03803)

Seq: PMVJ01000141.1 Acidobacteriaceae bacterium isolate bog_154 73.20110700_S1M.36_contig_57791, whole genome shotgun sequence (8569 bp)
Overview 1 RT 1: 3976-8568 bp Neighborhood of RT #1 [3976, 8568] P-type_ATPase_H RVT-GII GIIM Feature: gene Location: 3976-4290 bp Feature: gene Location: 4474-7023 bp Feature: domain Description: P-type_ATPase_H Location: 4621-6943 bp Feature: domain Description: P-type_ATPase_H Location: 4621-6943 bp Feature: gene Location: 7543-8238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7612-7861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7612-7861 bp Feature: domain Description: GIIM Note: maturase Location: 7933-8152 bp Feature: domain Description: GIIM Note: maturase Location: 793 3 -8152 bp Feature: gene Location: 8356-8568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-type_ATPase_H (cd02076), RVT-GII, GIIM (pfam08388)

Seq: PMVJ01000456.1 Acidobacteriaceae bacterium isolate bog_154 73.20110700_S1M.36_contig_7177, whole genome shotgun sequence (25309 bp)
Overview 1 RT 1: 19854-25306 bp Neighborhood of RT #1 [19854, 25306] AAK_UMPK-PyrH-Ec RecQ RecQ RVT-Retrons Trypsin_2 tsf Feature: gene Location: 19854-20573 bp Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 19875-20565 bp Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 19875-20565 bp Feature: gene Location: 20734-22278 bp Feature: domain Description: RecQ Location: 20749-21970 bp Feature: domain Description: RecQ Location: 2074 9-21970 bp Feature: domain Description: RecQ Location: 22054-22273 bp Feature: domain Description: RecQ Location: 22054 -22273 bp Feature: gene Location: 22519-24177 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22687-23287 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22687-23287 bp Feature: domain Description: Trypsin_2 Location: 23677-24076 bp Feature: domain Description: Trypsin_2 Location: 23677-24 076 bp Feature: gene Location: 24229-24885 bp Feature: domain Description: tsf Location: 24250-24835 bp Feature: domain Description: tsf Location: 24 250-24 835 bp Feature: gene Location: 25103-25306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAK_UMPK-PyrH-Ec (cd04254), RecQ (COG0514), RVT-Retrons, Trypsin_2 (pfam13365), tsf (TIGR00116)

Seq: PMVJ01000205.1 Acidobacteriaceae bacterium isolate bog_154 73.20110700_S1M.36_contig_8379, whole genome shotgun sequence (20347 bp)
Overview 1 RT 1: 1678-6191 bp Neighborhood of RT #1 [1678, 6191] Gloeo_Verruco Gloeo_Verruco Gloeo_Verruco Gloeo_Verruco Gloeo_Verruco Gloeo_Verruco Gloeo_Verruco RVT-GII YidH Feature: gene Location: 1678-2985 bp Feature: domain Description: Gloeo_Verruco Location: 1876-1954 bp Feature: domain Description: Gloeo_Verruco Location: 1876-195 4 bp Feature: domain Description: Gloeo_Verruco Location: 2053-2128 bp Feature: domain Description: Gloeo_Verruco Location: 205 3-2128 bp Feature: domain Description: Gloeo_Verruco Location: 2254-2371 bp Feature: domain Description: Gloeo_Verruco Location: 225 4-2371 bp Feature: domain Description: Gloeo_Verruco Location: 2431-2518 bp Feature: domain Description: Gloeo_Verruco Location: 2431-25 18 bp Feature: domain Description: Gloeo_Verruco Location: 2596-2650 bp Feature: domain Description: Gloeo_Verruco Location: 25 96-265 0 bp Feature: domain Description: Gloeo_Verruco Location: 2743-2848 bp Feature: domain Description: Gloeo_Verruco Location: 2743-2848 bp Feature: domain Description: Gloeo_Verruco Location: 2917-2965 bp Feature: domain Description: Gloeo_Verruco Location: 2917-2965 bp Feature: gene Location: 3250-3564 bp Feature: gene Location: 3566-4888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3821-4511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3821-45 11 bp Feature: gene Location: 5148-5618 bp Feature: domain Description: YidH Location: 5253-5589 bp Feature: domain Description: YidH Location: 5 25 3-5 5 89 bp Feature: gene Location: 5634-6191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gloeo_Verruco (TIGR03803), RVT-GII, YidH (COG2149)