myRT

myRT report for GCA_003167925.1_20110700_S1D

Download annotations/find similar RTs

Seq: PMUW01000148.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1385 73.20110700_S1D.10_contig_1247, whole genome shotgun sequence (40177 bp)
Overview 1 RT 1: 3506-6308 bp Neighborhood of RT #1 [3506, 6358] RVT-GII GIIM KdpC Feature: gene Location: 3506-3760 bp Feature: gene Location: 3800-3931 bp Feature: gene Location: 4198-5082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4204-4558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4204-4558 bp Feature: domain Description: GIIM Note: maturase Location: 4618-4846 bp Feature: domain Description: GIIM Note: maturase Location: 461 8-4846 bp Feature: gene Location: 5118-5288 bp Feature: gene Location: 5735-6358 bp Feature: domain Description: KdpC Location: 5753-6308 bp Feature: domain Description: KdpC Location: 5753-6308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KdpC (pfam02669)

Seq: PMUW01000184.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1385 73.20110700_S1D.10_contig_2934, whole genome shotgun sequence (5169 bp)
Overview 1 RT 1: 2857-4801 bp Neighborhood of RT #1 [2857, 5037] RVT_N RVT-GII GIIM Feature: gene Location: 2857-3141 bp Feature: gene Location: 3235-3483 bp Feature: gene Location: 3529-5037 bp Feature: RT Description: RVT_N Location: 3580-3823 bp Feature: RT Description: RVT_N Location: 3580-382 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3868-4513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3868-4513 bp Feature: domain Description: GIIM Note: maturase Location: 4570-4801 bp Feature: domain Description: GIIM Note: maturase Location: 4570-4801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PMUW01000079.1 Verrucomicrobia subdivision 3 bacterium isolate bog_1385 73.20110700_S1D.10_contig_482, whole genome shotgun sequence (23886 bp)
Overview 1 RT 1: 3035-6077 bp Neighborhood of RT #1 [3035, 6077] RVT_N RVT-GII GIIM HTH_XRE Feature: gene Location: 3035-3220 bp Feature: gene Location: 3463-3735 bp Feature: gene Location: 3820-5328 bp Feature: RT Description: RVT_N Location: 3871-4114 bp Feature: RT Description: RVT_N Location: 3 871-4114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4159-4804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4159-4804 bp Feature: domain Description: GIIM Note: maturase Location: 4864-5092 bp Feature: domain Description: GIIM Note: maturase Location: 4864-5092 bp Feature: gene Location: 5459-5860 bp Feature: domain Description: HTH_XRE Location: 5684-5846 bp Feature: domain Description: HTH_XRE Location: 5684-5846 bp Feature: gene Location: 5892-6077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)