myRT

myRT report for GCA_003167955.1_20110700_P3S

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Seq: PMUV01000079.1 Acidobacteriaceae bacterium isolate palsa_148 73.20110700_P3S.4_contig_1047, whole genome shotgun sequence (105168 bp)
Overview 1 RT 1: 94249-99005 bp Neighborhood of RT #1 [94249, 99058] RVT-Retrons RVT-Retrons recQ recQ DmpA Feature: gene Location: 94249-94377 bp Feature: gene Location: 94451-95155 bp Feature: gene Location: 95152-95937 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95251-95443 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95251 -95443 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95446-95701 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95446-95701 bp Feature: gene Location: 95976-97511 bp Feature: domain Description: recQ Location: 96009-97185 bp Feature: domain Description: recQ Location: 96009-971 85 bp Feature: domain Description: recQ Location: 97233-97482 bp Feature: domain Description: recQ Location: 97233-97482 bp Feature: gene Location: 97883-99058 bp Feature: domain Description: DmpA Location: 97991-99005 bp Feature: domain Description: DmpA Location: 97991 -99005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, recQ (TIGR01389), DmpA (COG3191)

Seq: PMUV01000013.1 Acidobacteriaceae bacterium isolate palsa_148 73.20110700_P3S.4_contig_876, whole genome shotgun sequence (12702 bp)
Overview 1 RT 1: 2771-6700 bp Neighborhood of RT #1 [2771, 6700] Cytidylate_kin2 SRAP RVT_N RVT-GII GIIM SRAP Feature: gene Location: 2771-3400 bp Feature: domain Description: Cytidylate_kin2 Location: 2783-3326 bp Feature: domain Description: Cytidylate_kin2 Location: 2 783-332 6 bp Feature: gene Location: 3450-3902 bp Feature: domain Description: SRAP Location: 3531-3867 bp Feature: domain Description: SRAP Location: 3531-3867 bp Feature: gene Location: 3931-5406 bp Feature: RT Description: RVT_N Location: 3976-4213 bp Feature: RT Description: RVT_N Location: 3976-42 13 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4264-4912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 64-4912 bp Feature: domain Description: GIIM Note: maturase Location: 4972-5200 bp Feature: domain Description: GIIM Note: maturase Location: 4972 -52 00 bp Feature: gene Location: 5901-6155 bp Feature: domain Description: SRAP Location: 5904-6072 bp Feature: domain Description: SRAP Location: 5904-6072 bp Feature: gene Location: 6467-6700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cytidylate_kin2 (pfam13189), SRAP (pfam02586), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)