myRT

myRT report for GCA_003168135.1_20110700_P2D

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Seq: PMTG01000082.1 Acidimicrobiaceae bacterium isolate palsa_510 73.20110700_P2D.24_contig_12896, whole genome shotgun sequence (24030 bp)
Overview 1 RT 1: 9553-13935 bp Neighborhood of RT #1 [9553, 14228] COG2865 RVT-GII GIIM NERD Feature: gene Location: 9553-9759 bp Feature: gene Location: 9810-11096 bp Feature: domain Description: COG2865 Location: 9909-10308 bp Feature: domain Description: COG2865 Location: 9909-1 0308 bp Feature: gene Location: 11438-12712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11654-12314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 654-1 231 4 bp Feature: domain Description: GIIM Note: maturase Location: 12404-12617 bp Feature: domain Description: GIIM Note: maturase Location: 1 2404-1 261 7 bp Feature: gene Location: 12820-13101 bp Feature: gene Location: 13413-14228 bp Feature: domain Description: NERD Location: 13689-13935 bp Feature: domain Description: NERD Location: 1 3689-1 3935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NERD (pfam08378), COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: PMTG01000034.1 Acidimicrobiaceae bacterium isolate palsa_510 73.20110700_P2D.24_contig_27946, whole genome shotgun sequence (86036 bp)
Overview 1 RT 1: 24677-29510 bp Neighborhood of RT #1 [24677, 29593] RVT-GII PRK00174 Feature: gene Location: 24677-24853 bp Feature: gene Location: 24915-25046 bp Feature: gene Location: 25462-25908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25600-25903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5600-2 5903 bp Feature: gene Location: 26092-26811 bp Feature: gene Location: 27470-29593 bp Feature: domain Description: PRK00174 Location: 27623-29510 bp Feature: domain Description: PRK00174 Location: 2 762 3-2 9510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK00174 (acetyl-CoA synthetase; Provisional)

Seq: PMTG01000053.1 Acidimicrobiaceae bacterium isolate palsa_510 73.20110700_P2D.24_contig_49118, whole genome shotgun sequence (23772 bp)
Overview 1 RT 1: 19175-23448 bp Neighborhood of RT #1 [19175, 23448] ANTAR CypX RVT-GII GIIM Feature: gene Location: 19175-19471 bp Feature: domain Description: ANTAR Location: 19322-19448 bp Feature: domain Description: ANTAR Location: 193 22-19448 bp Feature: gene Location: 19498-20724 bp Feature: domain Description: CypX Location: 19540-20698 bp Feature: domain Description: CypX Location: 19540-20698 bp Feature: gene Location: 20835-22175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21153-21780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21153 -21780 bp Feature: domain Description: GIIM Note: maturase Location: 21870-22083 bp Feature: domain Description: GIIM Note: maturase Location: 21870-22083 bp Feature: gene Location: 22828-23448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANTAR (smart01012), CypX (COG2124), RVT-GII, GIIM (pfam08388)