myRT

myRT report for GCA_003168195.1_20110700_P1S

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Seq: PMSY01000005.1 Actinobacteria bacterium isolate palsa_507 73.20110700_P1S.4_contig_18523, whole genome shotgun sequence (4551 bp)
Overview 1 RT 1: 3016-4261 bp Neighborhood of RT #1 [3016, 4353] RHH_1 RVT-GII GIIM Feature: gene Location: 3016-3357 bp Feature: domain Description: RHH_1 Location: 3220-3325 bp Feature: domain Description: RHH_1 Location: 3220-3325 bp Feature: gene Location: 3416-3637 bp Feature: gene Location: 3625-4353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3691-3928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3691 -3928 bp Feature: domain Description: GIIM Note: maturase Location: 4045-4261 bp Feature: domain Description: GIIM Note: maturase Location: 4045-4261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RHH_1 (pfam01402), RVT-GII, GIIM (pfam08388)

Seq: PMSY01000707.1 Actinobacteria bacterium isolate palsa_507 73.20110700_P1S.4_contig_22010, whole genome shotgun sequence (3775 bp)
Overview 1 RT 1: 3-3719 bp Neighborhood of RT #1 [3, 3754] DnrI Methyltransf_31 RVT-GII Intron_maturas2 DUF5372 Feature: gene Location: 3-425 bp Feature: domain Description: DnrI Location: 24-372 bp Feature: domain Description: DnrI Location: 2 4-372 bp Feature: gene Location: 1082-1579 bp Feature: domain Description: Methyltransf_31 Location: 1091-1373 bp Feature: domain Description: Methyltransf_31 Location: 1091-1373 bp Feature: gene Location: 1858-3066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1861-2344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1861-2 344 bp Feature: domain Description: Intron_maturas2 Location: 2461-2683 bp Feature: domain Description: Intron_maturas2 Location: 2 461-2 683 bp Feature: gene Location: 3243-3518 bp Feature: gene Location: 3515-3754 bp Feature: domain Description: DUF5372 Location: 3545-3719 bp Feature: domain Description: DUF5372 Location: 3545-3719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnrI (COG3629), Methyltransf_31 (pfam13847), RVT-GII, Intron_maturas2 (pfam01348), DUF5372 (pfam17342)

Seq: PMSY01000014.1 Actinobacteria bacterium isolate palsa_507 73.20110700_P1S.4_contig_5575, whole genome shotgun sequence (4367 bp)
Overview 1 RT 1: 348-4285 bp Neighborhood of RT #1 [348, 4365] LZ_Tnp_IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 348-650 bp Feature: gene Location: 756-1571 bp Feature: domain Description: LZ_Tnp_IS66 Location: 939-1134 bp Feature: domain Description: LZ_Tnp_IS66 Location: 93 9-113 4 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1341-1563 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13 41-1563 bp Feature: gene Location: 2155-3618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2491-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2491-3 187 bp Feature: domain Description: GIIM Note: maturase Location: 3256-3478 bp Feature: domain Description: GIIM Note: maturase Location: 3 256-3 478 bp Feature: gene Location: 3793-4365 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3805-4285 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 805-4285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: PMSY01000648.1 Actinobacteria bacterium isolate palsa_507 73.20110700_P1S.4_contig_6149, whole genome shotgun sequence (14070 bp)
Overview 1 RT 1: 5890-9961 bp Neighborhood of RT #1 [5890, 10077] RVT-GII GIIM LanC_like VOC_like Feature: gene Location: 5890-6144 bp Feature: gene Location: 6471-6776 bp Feature: gene Location: 6984-8246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7200-7860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7200-7860 bp Feature: domain Description: GIIM Note: maturase Location: 7938-8169 bp Feature: domain Description: GIIM Note: maturase Location: 7938-8169 bp Feature: gene Location: 8983-9555 bp Feature: domain Description: LanC_like Location: 8992-9484 bp Feature: domain Description: LanC_like Location: 8992-94 84 bp Feature: gene Location: 9589-10077 bp Feature: domain Description: VOC_like Location: 9622-9961 bp Feature: domain Description: VOC_like Location: 9622-9961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LanC_like (cl04955), VOC_like (cd16355)