myRT

myRT report for GCA_003168255.1_20110700_P1S

Download annotations/find similar RTs

Seq: PMSU01000065.1 Actinobacteria bacterium isolate palsa_505 73.20110700_P1S.16_contig_1029, whole genome shotgun sequence (34435 bp)
Overview 1 RT 1: 12158-16900 bp Neighborhood of RT #1 [12158, 16965] AcrR RVT-GII GIIM xerC MhpC Feature: gene Location: 12158-12289 bp Feature: gene Location: 12424-13035 bp Feature: domain Description: AcrR Location: 12433-12925 bp Feature: domain Description: AcrR Location: 1 2433-1 2925 bp Feature: gene Location: 13263-14711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13710-13956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 371 0-1 3956 bp Feature: domain Description: GIIM Note: maturase Location: 14094-14256 bp Feature: domain Description: GIIM Note: maturase Location: 1 4094-1 4256 bp Feature: gene Location: 14928-16253 bp Feature: domain Description: xerC Location: 15261-15786 bp Feature: domain Description: xerC Location: 1 5261 -1 5786 bp Feature: gene Location: 16075-16965 bp Feature: domain Description: MhpC Location: 16168-16900 bp Feature: domain Description: MhpC Location: 1 61 68-1 6900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), RVT-GII, GIIM (pfam08388), xerC (PRK01287), MhpC (COG0596)

Seq: PMSU01000144.1 Actinobacteria bacterium isolate palsa_505 73.20110700_P1S.16_contig_4565, whole genome shotgun sequence (6105 bp)
Overview 1 RT 1: 618-6104 bp Neighborhood of RT #1 [618, 6104] RVT-GII GIIM RVT-GII RVT-GII GIIM Feature: gene Location: 618-2039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942 -162 6 bp Feature: domain Description: GIIM Note: maturase Location: 1698-1929 bp Feature: domain Description: GIIM Note: maturase Location: 1698-192 9 bp Feature: gene Location: 3095-3994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3161-3257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3161-32 57 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3269-3632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 69-3632 bp Feature: domain Description: GIIM Note: maturase Location: 3689-3917 bp Feature: domain Description: GIIM Note: maturase Location: 3689-3917 bp Feature: gene Location: 4053-4439 bp Feature: gene Location: 4455-6104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PMSU01000043.1 Actinobacteria bacterium isolate palsa_505 73.20110700_P1S.16_contig_581, whole genome shotgun sequence (50240 bp)
Overview 1 RT 1: 2-5027 bp Neighborhood of RT #1 [2, 5027] DDE_Tnp_IS66 RVT-GII Intron_maturas2 Feature: gene Location: 2-565 bp Feature: domain Description: DDE_Tnp_IS66 Location: 185-560 bp Feature: domain Description: DDE_Tnp_IS66 Location: 185-560 bp Feature: gene Location: 572-1882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 713-908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 713 -908 bp Feature: domain Description: Intron_maturas2 Location: 1013-1244 bp Feature: domain Description: Intron_maturas2 Location: 1013 -1244 bp Feature: gene Location: 2010-3920 bp Feature: gene Location: 4308-5027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, Intron_maturas2 (pfam01348)

Seq: PMSU01000140.1 Actinobacteria bacterium isolate palsa_505 73.20110700_P1S.16_contig_86, whole genome shotgun sequence (78844 bp)
Overview 1 RT 1: 66144-69170 bp Neighborhood of RT #1 [66144, 69178] YfmG RVT-CRISPR-like NrdG PTPS Feature: gene Location: 66144-66599 bp Feature: gene Location: 66596-67150 bp Feature: domain Description: YfmG Location: 66731-67145 bp Feature: domain Description: YfmG Location: 66731-6714 5 bp Feature: gene Location: 67163-68119 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 67559-68078 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 67559-68078 bp Feature: gene Location: 68109-68804 bp Feature: domain Description: NrdG Location: 68127-68787 bp Feature: domain Description: NrdG Location: 68127-68787 bp Feature: gene Location: 68801-69178 bp Feature: domain Description: PTPS Location: 68813-69170 bp Feature: domain Description: PTPS Location: 68813-69170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-CRISPR, NrdG (TIGR02491), PTPS (pfam01242)