myRT

myRT report for GCA_003169035.1_20110600_S2D

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Seq: PMQN01000279.1 Verrucomicrobiales bacterium isolate bog_1375 73.20110600_S2D.34_contig_14055, whole genome shotgun sequence (6114 bp)
Overview 1 RT 1: 3423-6113 bp Neighborhood of RT #1 [3423, 6113] RVT-GII GIIM RVT-GII Feature: gene Location: 3423-3644 bp Feature: gene Location: 3927-4466 bp Feature: gene Location: 4660-5451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4663-5023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4663-5023 bp Feature: domain Description: GIIM Note: maturase Location: 5068-5299 bp Feature: domain Description: GIIM Note: maturase Location: 5068-5299 bp Feature: gene Location: 5498-5932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5834-5909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5834-5909 bp Feature: gene Location: 5946-6113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PMQN01000640.1 Verrucomicrobiales bacterium isolate bog_1375 73.20110600_S2D.34_contig_17114, whole genome shotgun sequence (3956 bp)
Overview 1 RT 1: 1-3233 bp Neighborhood of RT #1 [1, 3955] YfmG HRDC RVT-DGRs CarboxypepD_reg Feature: gene Location: 1-1071 bp Feature: domain Description: YfmG Location: 277-1054 bp Feature: domain Description: YfmG Location: 2 77-1054 bp Feature: gene Location: 1235-1699 bp Feature: domain Description: HRDC Location: 1478-1670 bp Feature: domain Description: HRDC Location: 1478-1670 bp Feature: gene Location: 1717-2868 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1777-2365 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1777-2 365 bp Feature: gene Location: 2876-3955 bp Feature: domain Description: CarboxypepD_reg Location: 3014-3233 bp Feature: domain Description: CarboxypepD_reg Location: 3014-32 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), HRDC (smart00341), RVT-DGRs, CarboxypepD_reg (pfam13620)

Seq: PMQN01000658.1 Verrucomicrobiales bacterium isolate bog_1375 73.20110600_S2D.34_contig_25232, whole genome shotgun sequence (3434 bp)
Overview 1 RT 1: 12-2958 bp Neighborhood of RT #1 [12, 3062] RVT-GII GIIM RVT-GII PinE rve_3 Feature: gene Location: 12-461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-99 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-99 bp Feature: domain Description: GIIM Note: maturase Location: 144-360 bp Feature: domain Description: GIIM Note: maturase Location: 144-3 60 bp Feature: gene Location: 471-782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-777 bp Feature: gene Location: 1288-1962 bp Feature: domain Description: PinE Location: 1339-1915 bp Feature: domain Description: PinE Location: 13 3 9-1915 bp Feature: gene Location: 2118-3062 bp Feature: domain Description: rve_3 Location: 2784-2958 bp Feature: domain Description: rve_3 Location: 2784-2958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PinE (COG1961), rve_3 (pfam13683)

Seq: PMQN01000153.1 Verrucomicrobiales bacterium isolate bog_1375 73.20110600_S2D.34_contig_32316, whole genome shotgun sequence (3045 bp)
Overview 1 RT 1: 2-2979 bp Neighborhood of RT #1 [2, 3044] RVT-GII RVT-GII TrmN6 F5_F8_type_C Feature: gene Location: 2-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-263 bp Feature: gene Location: 411-1094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936-1050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936-1050 bp Feature: gene Location: 1642-2499 bp Feature: domain Description: TrmN6 Location: 1762-2245 bp Feature: domain Description: TrmN6 Location: 1762-224 5 bp Feature: gene Location: 2529-3044 bp Feature: domain Description: F5_F8_type_C Location: 2664-2979 bp Feature: domain Description: F5_F8_type_C Location: 2664 -2979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TrmN6 (COG4123), F5_F8_type_C (pfam00754)

Seq: PMQN01000075.1 Verrucomicrobiales bacterium isolate bog_1375 73.20110600_S2D.34_contig_70187, whole genome shotgun sequence (5221 bp)
Overview 1 RT 1: 2995-4499 bp Neighborhood of RT #1 [2995, 4588] RVT-GII Feature: gene Location: 2995-3720 bp Feature: gene Location: 3921-4106 bp Feature: gene Location: 4256-4588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4259-4499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425 9-4499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII