myRT

myRT report for GCA_003169555.1_20110600_S2D

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Seq: PMQF01000202.1 Acidimicrobiaceae bacterium isolate bog_478 73.20110600_S2D.12_contig_35152, whole genome shotgun sequence (5646 bp)
Overview 1 RT 1: 1-4216 bp Neighborhood of RT #1 [1, 4242] PotE RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 1-894 bp Feature: domain Description: PotE Location: 4-739 bp Feature: domain Description: PotE Location: 4-739 bp Feature: gene Location: 1417-2232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1426-1486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 426-1 486 bp Feature: domain Description: GIIM Note: maturase Location: 1540-1771 bp Feature: domain Description: GIIM Note: maturase Location: 1 540-1 771 bp Feature: gene Location: 2402-3391 bp Feature: domain Description: Phage_int_SAM_1 Location: 2438-2687 bp Feature: domain Description: Phage_int_SAM_1 Location: 2438-2687 bp Feature: domain Description: INT_RitC_C_like Location: 2774-3317 bp Feature: domain Description: INT_RitC_C_like Location: 2774-331 7 bp Feature: gene Location: 3388-4242 bp Feature: domain Description: INT_RitB_C_like Location: 3637-4216 bp Feature: domain Description: INT_RitB_C_like Location: 3637-421 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PotE (COG0531), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797)

Seq: PMQF01000024.1 Acidimicrobiaceae bacterium isolate bog_478 73.20110600_S2D.12_contig_3585, whole genome shotgun sequence (8081 bp)
Overview 1 RT 1: 1343-5333 bp Neighborhood of RT #1 [1343, 5333] DEDD_Tnp_IS110 RVT-GII GIIM COG3547 Feature: gene Location: 1343-1768 bp Feature: gene Location: 1866-2009 bp Feature: gene Location: 1379-3499 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1406-1598 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1406-1598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2387-3065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 387-3065 bp Feature: domain Description: GIIM Note: maturase Location: 3143-3368 bp Feature: domain Description: GIIM Note: maturase Location: 3143-3368 bp Feature: gene Location: 3649-4641 bp Feature: domain Description: COG3547 Location: 3664-4501 bp Feature: domain Description: COG3547 Location: 3664-4501 bp Feature: gene Location: 5040-5333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )