myRT

myRT report for GCA_003170295.1_20110800_P1D

Download annotations/find similar RTs

Seq: PNAJ01000019.1 Bryobacterales bacterium isolate palsa_187 73.20110800_P1D.42_contig_1239, whole genome shotgun sequence (3054 bp)
Overview 1 RT 1: 1-2265 bp Neighborhood of RT #1 [1, 2276] RVT-GII GIIM PQQ_ABC_repeats PQQ_ABC_repeats Feature: gene Location: 1-798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-382 bp Feature: domain Description: GIIM Note: maturase Location: 433-649 bp Feature: domain Description: GIIM Note: maturase Location: 433-649 bp Feature: gene Location: 889-1089 bp Feature: gene Location: 1215-2276 bp Feature: domain Description: PQQ_ABC_repeats Location: 1320-1482 bp Feature: domain Description: PQQ_ABC_repeats Location: 1 320-1 482 bp Feature: domain Description: PQQ_ABC_repeats Location: 1536-2265 bp Feature: domain Description: PQQ_ABC_repeats Location: 1 536-2265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PQQ_ABC_repeats (TIGR03866), RVT-GII, GIIM (pfam08388)

Seq: PNAJ01000125.1 Bryobacterales bacterium isolate palsa_187 73.20110800_P1D.42_contig_199, whole genome shotgun sequence (128287 bp)
Overview 1 RT 1: 22293-26690 bp Neighborhood of RT #1 [22293, 26872] CAP_ED COG4420 D-aminoacylase D-aminoacylase RVT-Retrons HipB HTH_XRE Feature: gene Location: 22293-23120 bp Feature: domain Description: CAP_ED Location: 22344-22683 bp Feature: domain Description: CAP_ED Location: 2 2 344-2 2 683 bp Feature: domain Description: COG4420 Location: 22743-23091 bp Feature: domain Description: COG442 0 Location: 2 2 743-2 3091 bp Feature: gene Location: 23117-24697 bp Feature: domain Description: D-aminoacylase Location: 23189-23477 bp Feature: domain Description: D-aminoacylase Location: 2 3189-2 3477 bp Feature: domain Description: D-aminoacylase Location: 23480-24671 bp Feature: domain Description: D-aminoacylase Location: 2 3480-2 4671 bp Feature: gene Location: 24699-25469 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24702-25164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 4702 -2 5164 bp Feature: gene Location: 25652-25957 bp Feature: domain Description: HipB Location: 25655-25871 bp Feature: domain Description: HipB Location: 2 5655-2 5871 bp Feature: gene Location: 26555-26872 bp Feature: domain Description: HTH_XRE Location: 26558-26690 bp Feature: domain Description: HTH_XRE Location: 2 6558-2 6690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CAP_ED (cl00047), COG4420 (Uncharacterized membrane protein ), D-aminoacylase (cd01297), RVT-Retrons, HipB (COG1396), HTH_XRE (smart00530)

Seq: PNAJ01000035.1 Bryobacterales bacterium isolate palsa_187 73.20110800_P1D.42_contig_24567, whole genome shotgun sequence (30036 bp)
Overview 1 RT 1: 974-4667 bp Neighborhood of RT #1 [974, 4699] DUF1566 Avd_like RVT-DGRs FieF Feature: gene Location: 974-1555 bp Feature: domain Description: DUF1566 Location: 1283-1553 bp Feature: domain Description: DUF1566 Location: 1283 -1553 bp Feature: gene Location: 1646-2008 bp Feature: domain Description: Avd_like Location: 1673-1979 bp Feature: domain Description: Avd_like Location: 1673 -1979 bp Feature: gene Location: 2401-3528 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2593-3280 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2593 -3 280 bp Feature: gene Location: 3544-3924 bp Feature: gene Location: 4040-4699 bp Feature: domain Description: FieF Location: 4097-4667 bp Feature: domain Description: FieF Location: 4097-4667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, FieF (COG0053), DUF1566 (pfam07603)

Seq: PNAJ01000164.1 Bryobacterales bacterium isolate palsa_187 73.20110800_P1D.42_contig_3158, whole genome shotgun sequence (28549 bp)
Overview 1 RT 1: 26035-28548 bp Neighborhood of RT #1 [26035, 28547] KOG1262 RVT-GII Feature: gene Location: 26035-27348 bp Feature: domain Description: KOG1262 Location: 26164-27337 bp Feature: domain Description: KOG1262 Location: 26164 -27337 bp Feature: gene Location: 27392-27676 bp Feature: gene Location: 28230-28547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28422-28548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284 22-2854 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1262 (KOG1262, FAD-binding protein DIMINUTO ), RVT-GII