myRT

myRT report for GCA_003171095.1_20110800_E1D

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Seq: PMXL01000206.1 Myxococcales bacterium isolate fen_1095 73.20110800_E1D.21_contig_103, whole genome shotgun sequence (20218 bp)
Overview 1 RT 1: 137-6965 bp Neighborhood of RT #1 [137, 6965] XerC YhdJ RVT-CRISPR-like Noc_N Feature: gene Location: 137-1411 bp Feature: domain Description: XerC Location: 458-1385 bp Feature: domain Description: XerC Location: 458-1 385 bp Feature: gene Location: 1630-2553 bp Feature: domain Description: YhdJ Location: 1720-2395 bp Feature: domain Description: YhdJ Location: 1 720-2395 bp Feature: gene Location: 2747-5077 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2984-3527 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2984-3527 bp Feature: gene Location: 5104-6537 bp Feature: domain Description: Noc_N Location: 5587-5863 bp Feature: domain Description: Noc_N Location: 5587-5863 bp Feature: gene Location: 6813-6965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), YhdJ (COG0863), RVT-CRISPR, Noc_N (cd16396)

Seq: PMXL01000322.1 Myxococcales bacterium isolate fen_1095 73.20110800_E1D.21_contig_14628, whole genome shotgun sequence (3816 bp)
Overview 1 RT 1: 1-3131 bp Neighborhood of RT #1 [1, 3190] DUF1738 RVT-GII GIIM MPTase-PolyVal Feature: gene Location: 1-447 bp Feature: domain Description: DUF1738 Location: 103-397 bp Feature: domain Description: DUF1738 Location: 103-397 bp Feature: gene Location: 477-2108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-1599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-1599 bp Feature: domain Description: GIIM Note: maturase Location: 1674-1890 bp Feature: domain Description: GIIM Note: maturase Location: 1674-1890 bp Feature: gene Location: 2109-2573 bp Feature: gene Location: 2702-3190 bp Feature: domain Description: MPTase-PolyVal Location: 2747-3131 bp Feature: domain Description: MPTase-PolyVal Location: 2 747-3131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), MPTase-PolyVal (pfam18818), RVT-GII, GIIM (pfam08388)

Seq: PMXL01000063.1 Myxococcales bacterium isolate fen_1095 73.20110800_E1D.21_contig_21368, whole genome shotgun sequence (3048 bp)
Overview 1 RT 1: 1-2964 bp Neighborhood of RT #1 [1, 2990] COG3587 COG3587 RVT-GII Feature: gene Location: 1-1368 bp Feature: domain Description: COG3587 Location: 7-121 bp Feature: domain Description: COG3 587 Location: 7-121 bp Feature: domain Description: COG3587 Location: 1084-1234 bp Feature: domain Description: COG3 587 Location: 1084-123 4 bp Feature: gene Location: 1660-2061 bp Feature: gene Location: 2280-2990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2613-2964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2613 -2964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3587 (Restriction endonuclease ), RVT-GII

Seq: PMXL01000217.1 Myxococcales bacterium isolate fen_1095 73.20110800_E1D.21_contig_3815, whole genome shotgun sequence (23188 bp)
Overview 1 RT 1: 20151-22625 bp Neighborhood of RT #1 [20151, 22693] RVT-GII GIIM Feature: gene Location: 20151-20459 bp Feature: gene Location: 20742-21275 bp Feature: gene Location: 21419-22693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21713-22355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21713-22355 bp Feature: domain Description: GIIM Note: maturase Location: 22412-22625 bp Feature: domain Description: GIIM Note: maturase Location: 224 12-22625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PMXL01000076.1 Myxococcales bacterium isolate fen_1095 73.20110800_E1D.21_contig_4379, whole genome shotgun sequence (11842 bp)
Overview 1 RT 1: 8265-11828 bp Neighborhood of RT #1 [8265, 11839] RVT-DGRs Avd_like pfam03781 Feature: gene Location: 8265-8564 bp Feature: gene Location: 8628-8810 bp Feature: gene Location: 8498-9919 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9044-9683 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9044-9683 bp Feature: gene Location: 10278-10487 bp Feature: domain Description: Avd_like Location: 10290-10473 bp Feature: domain Description: Avd_like Location: 10290-10473 bp Feature: gene Location: 10772-11839 bp Feature: domain Description: pfam03781 Location: 11114-11828 bp Feature: domain Description: pfam03781 Location: 11114-11828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-DGRs

Seq: PMXL01000036.1 Myxococcales bacterium isolate fen_1095 73.20110800_E1D.21_contig_49498, whole genome shotgun sequence (2838 bp)
Overview 1 RT 1: 3-2822 bp Neighborhood of RT #1 [3, 2836] RVT-DGRs Avd_like Feature: gene Location: 3-1073 bp Feature: gene Location: 982-2043 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1168-1807 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 116 8-1807 bp Feature: gene Location: 2402-2836 bp Feature: domain Description: Avd_like Location: 2525-2822 bp Feature: domain Description: Avd_like Location: 2525-2822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs