myRT

myRT report for GCA_003171175.1_20110800_E3D

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Seq: PMZH01000049.1 Syntrophaceae bacterium isolate fen_1101 73.20110800_E3D.23_contig_2588, whole genome shotgun sequence (15096 bp)
Overview 1 RT 1: 3-5742 bp Neighborhood of RT #1 [3, 5948] Eco57I TaqI_C group_II_RT_mat RVT-UNC tcm_partner photo_TT_lyase Feature: gene Location: 3-1721 bp Feature: domain Description: Eco57I Location: 474-804 bp Feature: domain Description: Eco57I Location: 474-804 bp Feature: domain Description: TaqI_C Location: 1161-1521 bp Feature: domain Description: TaqI_C Location: 1 1 61 -1 521 bp Feature: gene Location: 1782-3659 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1896-2136 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 896-21 36 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2220-2697 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2220-2697 bp Feature: gene Location: 3691-4818 bp Feature: domain Description: tcm_partner Location: 3724-4501 bp Feature: domain Description: tcm_partner Location: 3724-4501 bp Feature: gene Location: 4818-5948 bp Feature: domain Description: photo_TT_lyase Location: 5004-5742 bp Feature: domain Description: photo_TT_lyase Location: 5004-5742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Eco57I (pfam07669), TaqI_C (pfam12950), group_II_RT_mat (TIGR04416), RVT-UG9/RVT-UG19/RVT-UG23(RVT-UNC), tcm_partner (TIGR04474), photo_TT_lyase (TIGR04070)

Seq: PMZH01000199.1 Syntrophaceae bacterium isolate fen_1101 73.20110800_E3D.23_contig_30879, whole genome shotgun sequence (3771 bp)
Overview 1 RT 1: 26-3393 bp Neighborhood of RT #1 [26, 3431] RVT-GII GIIM Cupin_2 PHA02517 Feature: gene Location: 26-439 bp Feature: gene Location: 474-1829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783-1401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783-1401 bp Feature: domain Description: GIIM Note: maturase Location: 1449-1677 bp Feature: domain Description: GIIM Note: maturase Location: 1449-1677 bp Feature: gene Location: 2085-2540 bp Feature: domain Description: Cupin_2 Location: 2295-2499 bp Feature: domain Description: Cupin_2 Location: 2 2 95-2 499 bp Feature: gene Location: 2628-3431 bp Feature: domain Description: PHA02517 Location: 2700-3393 bp Feature: domain Description: PHA02 517 Location: 2 700-3393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Cupin_2 (pfam07883), PHA02517 (putative transposase OrfB; Reviewed)

Seq: PMZH01000339.1 Syntrophaceae bacterium isolate fen_1101 73.20110800_E3D.23_contig_40973, whole genome shotgun sequence (12839 bp)
Overview 1 RT 1: 11135-12708 bp Neighborhood of RT #1 [11135, 12803] RVT-GII GIIM Feature: gene Location: 11135-11266 bp Feature: gene Location: 11346-11480 bp Feature: gene Location: 11595-12803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11766-12426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11766-12426 bp Feature: domain Description: GIIM Note: maturase Location: 12495-12708 bp Feature: domain Description: GIIM Note: maturase Location: 12495-12708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PMZH01000025.1 Syntrophaceae bacterium isolate fen_1101 73.20110800_E3D.23_contig_45499, whole genome shotgun sequence (2904 bp)
Overview 1 RT 1: 347-2788 bp Neighborhood of RT #1 [347, 2901] HicB RVT-GII Intron_maturas2 HNHc Feature: gene Location: 347-562 bp Feature: domain Description: HicB Location: 356-512 bp Feature: domain Description: HicB Location: 356-512 bp Feature: gene Location: 803-946 bp Feature: gene Location: 1021-2901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258-2089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258-2089 bp Feature: domain Description: Intron_maturas2 Location: 2206-2545 bp Feature: domain Description: Intron_maturas2 Location: 2206-254 5 bp Feature: domain Description: HNHc Note: nucleases Location: 2611-2788 bp Feature: domain Description: HNHc Note: nucleases Location: 2611-2788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PMZH01000061.1 Syntrophaceae bacterium isolate fen_1101 73.20110800_E3D.23_contig_49407, whole genome shotgun sequence (6670 bp)
Overview 1 RT 1: 794-5987 bp Neighborhood of RT #1 [794, 5987] DUF5615 RVT-GII Intron_maturas2 HNHc DEXDc_RapA DEXDc_RapA Feature: gene Location: 794-1159 bp Feature: domain Description: DUF5615 Location: 803-1025 bp Feature: domain Description: DUF5 615 Location: 803-1025 bp Feature: gene Location: 1291-1605 bp Feature: gene Location: 2310-4220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2577-3408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 77-3408 bp Feature: domain Description: Intron_maturas2 Location: 3525-3855 bp Feature: domain Description: Intron_maturas2 Location: 35 25 -385 5 bp Feature: domain Description: HNHc Note: nucleases Location: 3939-4107 bp Feature: domain Description: HNHc Note: nucleases Location: 3939-4107 bp Feature: gene Location: 4292-5773 bp Feature: domain Description: DEXDc_RapA Location: 4304-4373 bp Feature: domain Description: DEXDc_RapA Location: 4304-4373 bp Feature: domain Description: DEXDc_RapA Location: 4607-4955 bp Feature: domain Description: DEXDc_RapA Location: 4607-495 5 bp Feature: gene Location: 5745-5987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5615 (pfam18480), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DEXDc_RapA (cd18011)