myRT

myRT report for GCA_003171475.1_20110800_E1D

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Seq: PMXN01000036.1 Acidobacteriaceae bacterium isolate fen_177 73.20110800_E1D.30_contig_2534, whole genome shotgun sequence (10931 bp)
Overview 1 RT 1: 6037-10710 bp Neighborhood of RT #1 [6037, 10718] HlyD_D23 CusA RVT-GII Feature: gene Location: 6037-7218 bp Feature: domain Description: HlyD_D23 Location: 6259-6967 bp Feature: domain Description: HlyD_D23 Location: 6259-6967 bp Feature: gene Location: 7233-10325 bp Feature: domain Description: CusA Location: 7236-10305 bp Feature: domain Description: CusA Location: 7236-1 0305 bp Feature: gene Location: 10377-10718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10605-10710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0605-1 071 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyD_D23 (pfam16576), CusA (COG3696), RVT-GII

Seq: PMXN01000417.1 Acidobacteriaceae bacterium isolate fen_177 73.20110800_E1D.30_contig_28186, whole genome shotgun sequence (15076 bp)
Overview 1 RT 1: 3-4098 bp Neighborhood of RT #1 [3, 4580] RVT-GII PRK14019 PRK14019 PRK14019 YgiQ Feature: gene Location: 3-1067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-693 bp Feature: gene Location: 1262-2593 bp Feature: domain Description: PRK14019 Location: 1307-2030 bp Feature: domain Description: PRK14019 Location: 1307-2 030 bp Feature: domain Description: PRK14019 Location: 2123-2273 bp Feature: domain Description: PRK14019 Location: 2 12 3-2 2 73 bp Feature: domain Description: PRK14019 Location: 2372-2552 bp Feature: domain Description: PRK14019 Location: 2 372 -2 552 bp Feature: gene Location: 2982-4580 bp Feature: domain Description: YgiQ Location: 3144-4098 bp Feature: domain Description: YgiQ Location: 3144-4098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK14019 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II), YgiQ (COG1032)

Seq: PMXN01000274.1 Acidobacteriaceae bacterium isolate fen_177 73.20110800_E1D.30_contig_580, whole genome shotgun sequence (4551 bp)
Overview 1 RT 1: 103-4539 bp Neighborhood of RT #1 [103, 4550] AlbA_2 AbiEii RVT-GII GIIM AbiEii Feature: gene Location: 103-1320 bp Feature: domain Description: AlbA_2 Location: 175-574 bp Feature: domain Description: AlbA_2 Location: 175-574 bp Feature: gene Location: 1380-2213 bp Feature: domain Description: AbiEii Location: 1521-2127 bp Feature: domain Description: AbiEii Location: 1521-2127 bp Feature: gene Location: 2170-3726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2476-3238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2476-3 23 8 bp Feature: domain Description: GIIM Note: maturase Location: 3310-3523 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 10-3 523 bp Feature: gene Location: 3783-4136 bp Feature: gene Location: 4332-4550 bp Feature: domain Description: AbiEii Location: 4455-4539 bp Feature: domain Description: AbiEii Location: 4455-453 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlbA_2 (pfam04326), AbiEii (pfam08843), RVT-GII, GIIM (pfam08388)

Seq: PMXN01000283.1 Acidobacteriaceae bacterium isolate fen_177 73.20110800_E1D.30_contig_8727, whole genome shotgun sequence (13691 bp)
Overview 1 RT 1: 3601-7083 bp Neighborhood of RT #1 [3601, 7083] GH27 PLN02899 RVT-GII DoxX Feature: gene Location: 3601-4974 bp Feature: domain Description: GH27 Location: 3730-4705 bp Feature: domain Description: GH27 Location: 3730-4 705 bp Feature: domain Description: PLN02899 Location: 4738-4963 bp Feature: domain Description: PLN02899 Location: 4 738-4 963 bp Feature: gene Location: 4974-5237 bp Feature: gene Location: 5432-5935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5540-5762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554 0-5762 bp Feature: gene Location: 6195-6629 bp Feature: domain Description: DoxX Location: 6237-6621 bp Feature: domain Description: DoxX Location: 6237-6621 bp Feature: gene Location: 6796-7083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH27 (cd14792), PLN02899 (alpha-galactosidase), RVT-GII, DoxX (pfam07681)