myRT

myRT report for GCA_003172875.1_ASM317287v1

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Seq: QGKM01000018.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_18, whole genome shotgun sequence (58295 bp)
Overview 1 RT 1: 5694-8935 bp Neighborhood of RT #1 [5694, 8935] Cas2_I_II_III Cas_Cas1 RVT-CRISPR Feature: gene Location: 5694-6032 bp Feature: domain Description: Cas2_I_II_III Location: 5709-5898 bp Feature: domain Description: Cas2_I_II_III Location: 5709-5898 bp Feature: gene Location: 6029-7045 bp Feature: domain Description: Cas_Cas1 Location: 6038-6890 bp Feature: domain Description: Cas_Cas1 Location: 6038-6890 bp Feature: gene Location: 7042-7881 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7249-7852 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7249-7852 bp Feature: gene Location: 8023-8193 bp Feature: gene Location: 8708-8935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-CRISPR

Seq: QGKM01000028.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_28, whole genome shotgun sequence (77079 bp)
Overview 1 RT 1: 14493-20071 bp Neighborhood of RT #1 [14493, 20406] KOG2161 PRK10137 Glyco_hydro_63 Glyco_hydro_63 Glyco_hydro_63 RVT-GII GIIM Methyltransf_25 Feature: gene Location: 14493-17135 bp Feature: domain Description: KOG2161 Location: 14511-15318 bp Feature: domain Description: KOG2 161 Location: 14511-15318 bp Feature: domain Description: PRK10137 Location: 15903-16101 bp Feature: domain Description: PRK10137 Location: 15903-16101 bp Feature: domain Description: Glyco_hydro_63 Location: 16170-16380 bp Feature: domain Description: Glyco_hydro_63 Location: 16170-16380 bp Feature: domain Description: Glyco_hydro_63 Location: 16599-16905 bp Feature: domain Description: Glyco_hydro_63 Location: 16599-16905 bp Feature: domain Description: Glyco_hydro_63 Location: 17034-17121 bp Feature: domain Description: Glyco_hydro_63 Location: 17034-1712 1 bp Feature: gene Location: 17710-17925 bp Feature: gene Location: 18093-18992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18099-18555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18099-18555 bp Feature: domain Description: GIIM Note: maturase Location: 18600-18822 bp Feature: domain Description: GIIM Note: maturase Location: 18600-1882 2 bp Feature: gene Location: 19119-19400 bp Feature: gene Location: 19621-20406 bp Feature: domain Description: Methyltransf_25 Location: 19792-20071 bp Feature: domain Description: Methyltransf_2 5 Location: 19792 -2 0071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2161 (KOG2161, Glucosidase I ), PRK10137 (alpha-glucosidase; Provisional), Glyco_hydro_63 (pfam03200), RVT-GII, GIIM (pfam08388), Methyltransf_25 (pfam13649)

Seq: QGKM01000034.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_34, whole genome shotgun sequence (8513 bp)
Overview 1 RT 1: 96-3844 bp Neighborhood of RT #1 [96, 3867] RVT-UG15 DUF820 COG2865 Feature: gene Location: 96-323 bp Feature: gene Location: 405-2036 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 828-1227 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 828-1227 bp Feature: gene Location: 2192-2377 bp Feature: domain Description: DUF820 Location: 2240-2375 bp Feature: domain Description: DUF820 Location: 2240-23 75 bp Feature: gene Location: 2647-3867 bp Feature: domain Description: COG2865 Location: 2650-3844 bp Feature: domain Description: COG2865 Location: 2650-3 844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, DUF820, COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: QGKM01000039.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_39, whole genome shotgun sequence (60915 bp)
Overview 1 RT 1: 12654-18044 bp Neighborhood of RT #1 [12654, 18044] OMP_b-brl TIR_2 COG5635 pfam03781 RVT-DGRs Avd_like Feature: gene Location: 12654-13289 bp Feature: domain Description: OMP_b-brl Location: 12828-13287 bp Feature: domain Description: OMP_b-brl Location: 12828-13287 bp Feature: gene Location: 13439-16246 bp Feature: domain Description: TIR_2 Location: 13460-13745 bp Feature: domain Description: TIR_2 Location: 134 60-1374 5 bp Feature: domain Description: COG5635 Location: 14033-14924 bp Feature: domain Description: COG5635 Location: 14 033-14 924 bp Feature: domain Description: pfam03781 Location: 15551-16214 bp Feature: domain Description: pfam03781 Location: 15551-16214 bp Feature: gene Location: 16299-17366 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16521-17169 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16521-17169 bp Feature: gene Location: 17353-17700 bp Feature: domain Description: Avd_like Location: 17374-17686 bp Feature: domain Description: Avd_like Location: 17374 -17686 bp Feature: gene Location: 17859-18044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_b-brl (pfam13505), TIR_2 (pfam13676), COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-DGRs, Avd_like (cd16376)

Seq: QGKM01000047.1 Leucothrix pacifica strain JCM 18388 JCM18388_1__paired__trimmed__paired__contig_47, whole genome shotgun sequence (39607 bp)
Overview 1 RT 1: 18824-21517 bp Neighborhood of RT #1 [18824, 21517] PIN_Pae0151-like PhdYeFM_antitox RVT-GII Feature: gene Location: 18824-19216 bp Feature: domain Description: PIN_Pae0151-like Location: 18839-19202 bp Feature: domain Description: PIN_Pae015 1-like Location: 18839-19202 bp Feature: gene Location: 19218-19448 bp Feature: domain Description: PhdYeFM_antitox Location: 19221-19344 bp Feature: domain Description: PhdYeFM_antitox Location: 19221-19344 bp Feature: gene Location: 19455-19844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19524-19653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195 24-1965 3 bp Feature: gene Location: 19856-20677 bp Feature: gene Location: 20747-21517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_Pae0151-like (cd09873), PhdYeFM_antitox (pfam02604), RVT-GII