myRT

myRT report for GCA_003176655.1_ASM317665v1

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Seq: QGSL01000088.1 Pseudomonas sp. RW407 NODE_269_LENGTH_1265817_COV_64.198029, whole genome shotgun sequence (1265915 bp)
Overview 1 RT 1: 391916-395095 bp 2 RT 2: 1099701-1102752 bp Neighborhood of RT #1 [391916, 395095] RVT-DGRs Avd_like Neighborhood of RT #2 [1099701, 1102766] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 391916-392113 bp Feature: gene Location: 392230-392493 bp Feature: gene Location: 392734-393822 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 392920-393604 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 392920-393604 bp Feature: gene Location: 394085-394438 bp Feature: domain Description: Avd_like Location: 394112-394418 bp Feature: domain Description: Avd_like Location: 3941 1 2-39441 8 bp Feature: gene Location: 394496-395095 bp Feature: gene Location: 1099701-1099922 bp Feature: gene Location: 1100029-1100430 bp Feature: gene Location: 1100427-1101524 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1100607-1101291 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 00607-1 1 01 291 bp Feature: gene Location: 1101795-1102151 bp Feature: domain Description: Avd_like Location: 1101822-1102125 bp Feature: domain Description: Avd_like Location: 1 1 01 822-1 1 021 25 bp Feature: gene Location: 1102182-1102766 bp Feature: domain Description: DUF1566 Location: 1102422-1102752 bp Feature: domain Description: DUF1 566 Location: 1 1 02422-1 1 02752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: QGSL01000002.1 Pseudomonas sp. RW407 NODE_2_LENGTH_59463_COV_310.556854, whole genome shotgun sequence (59561 bp)
Overview 1 RT 1: 7469-10520 bp Neighborhood of RT #1 [7469, 10534] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 7469-7690 bp Feature: gene Location: 7797-8198 bp Feature: gene Location: 8195-9292 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8375-9059 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8375-9059 bp Feature: gene Location: 9563-9919 bp Feature: domain Description: Avd_like Location: 9590-9893 bp Feature: domain Description: Avd_like Location: 9590-9893 bp Feature: gene Location: 9950-10534 bp Feature: domain Description: DUF1566 Location: 10190-10520 bp Feature: domain Description: DUF1566 Location: 10190-1052 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: QGSL01000029.1 Pseudomonas sp. RW407 NODE_86_LENGTH_1075672_COV_68.433075, whole genome shotgun sequence (1075770 bp)
Overview 1 RT 1: 200056-208935 bp Neighborhood of RT #1 [200056, 208961] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 200056-201312 bp Feature: domain Description: PRK10770 Location: 200110-201304 bp Feature: domain Description: PRK10770 Location: 200110-2013 04 bp Feature: gene Location: 201329-204199 bp Feature: domain Description: LptD Location: 201746-204185 bp Feature: domain Description: LptD Location: 201746-204185 bp Feature: gene Location: 204286-205998 bp Feature: RT Description: RVT_N Location: 204343-204586 bp Feature: RT Description: RVT_N Location: 2043 43 -204586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204631-205267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20463 1-205267 bp Feature: domain Description: YkfC Location: 205477-205627 bp Feature: domain Description: YkfC Location: 205477-205627 bp Feature: domain Description: HNH Note: nucleases Location: 205804-205942 bp Feature: domain Description: HNH Note: nucleases Location: 205804-205942 bp Feature: gene Location: 207274-208290 bp Feature: domain Description: COG3178 Location: 207280-208273 bp Feature: domain Description: COG3 178 Location: 207280-208273 bp Feature: gene Location: 208287-208961 bp Feature: domain Description: NTP_transferase_like_1 Location: 208293-208935 bp Feature: domain Description: NTP_transferase_like_1 Location: 208293 -20893 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)