myRT

myRT report for GCA_003176715.1_ASM317671v1

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Seq: QGSW01000142.1 Micromonospora sp. S4605 NODE_202_length_13579_cov_12.1299_ID_403, whole genome shotgun sequence (13579 bp)
Overview 1 RT 1: 8101-12567 bp Neighborhood of RT #1 [8101, 12698] zf-HC2 RpoE RVT-Retrons HTH_23 HTH_33 DDE_3 Feature: gene Location: 8101-8886 bp Feature: domain Description: zf-HC2 Location: 8134-8215 bp Feature: domain Description: zf-HC2 Location: 81 34-821 5 bp Feature: gene Location: 8883-9416 bp Feature: domain Description: RpoE Location: 8901-9411 bp Feature: domain Description: RpoE Location: 8901 -941 1 bp Feature: gene Location: 9705-11018 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10164-10785 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 01 64-1 0785 bp Feature: gene Location: 11605-12111 bp Feature: domain Description: HTH_23 Location: 11674-11812 bp Feature: domain Description: HTH_23 Location: 1 1 674-1 1 81 2 bp Feature: domain Description: HTH_33 Location: 11917-12091 bp Feature: domain Description: HTH_33 Location: 1 1 91 7-1 2091 bp Feature: gene Location: 12213-12698 bp Feature: domain Description: DDE_3 Location: 12357-12567 bp Feature: domain Description: DDE_3 Location: 1 2357-1 2567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), zf-HC2 (pfam13490), RpoE (COG3343), RVT-Retrons

Seq: QGSW01000379.1 Micromonospora sp. S4605 NODE_290_length_7889_cov_14.5884_ID_579, whole genome shotgun sequence (7889 bp)
Overview 1 RT 1: 5389-7424 bp Neighborhood of RT #1 [5389, 7810] DUF2637 RVT-GII Feature: gene Location: 5389-5583 bp Feature: gene Location: 5580-6509 bp Feature: domain Description: DUF2637 Location: 6072-6240 bp Feature: domain Description: DUF2 637 Location: 6072 -62 40 bp Feature: gene Location: 6635-7810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6965-7424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6965-742 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2637 (pfam10935), RVT-GII

Seq: QGSW01000078.1 Micromonospora sp. S4605 NODE_417_length_2199_cov_29.1979_ID_833, whole genome shotgun sequence (2199 bp)
Overview 1 RT 1: 139-1956 bp Neighborhood of RT #1 [139, 1956] RVT-GII GIIM Feature: gene Location: 139-1599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484-1180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484-1180 bp Feature: domain Description: GIIM Note: maturase Location: 1252-1471 bp Feature: domain Description: GIIM Note: maturase Location: 1252-1471 bp Feature: gene Location: 1444-1956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QGSW01000164.1 Micromonospora sp. S4605 NODE_47_length_33461_cov_16.0077_ID_93, whole genome shotgun sequence (33461 bp)
Overview 1 RT 1: 487-3680 bp Neighborhood of RT #1 [487, 4546] RVT-GII GIIM IS285 COG4127 ComA-like_MBL-fold Feature: gene Location: 487-1947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835-1522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835-1522 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1822 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1822 bp Feature: gene Location: 2127-2792 bp Feature: domain Description: IS285 Location: 2133-2775 bp Feature: domain Description: IS285 Location: 2133-2775 bp Feature: gene Location: 2903-4546 bp Feature: domain Description: COG4127 Location: 2918-3317 bp Feature: domain Description: COG4 127 Location: 2918-3317 bp Feature: domain Description: ComA-like_MBL-fold Location: 3446-3680 bp Feature: domain Description: ComA-like_MBL-fold Location: 34 4 6-3680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), ComA-like_MBL-fold (cd07731), RVT-GII, GIIM (pfam08388)