myRT

myRT report for GCA_003176895.1_ASM317689v1

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Seq: QGTD01000008.1 Gracilibacillus dipsosauri strain DD1 NODE_1_length_944662_cov_68.369322, whole genome shotgun sequence (944662 bp)
Overview 1 RT 1: 162156-166325 bp Neighborhood of RT #1 [162156, 166360] RVT-GII Intron_maturas2 PRK00024 PRK13927 Feature: gene Location: 162156-162287 bp Feature: gene Location: 162369-162695 bp Feature: gene Location: 163488-164810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163761-164358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 63761 -1 64358 bp Feature: domain Description: Intron_maturas2 Location: 164529-164736 bp Feature: domain Description: Intron_maturas2 Location: 1 64529-1 64736 bp Feature: gene Location: 164943-165119 bp Feature: domain Description: PRK00024 Location: 164982-165114 bp Feature: domain Description: PRK00024 Location: 1 64982-1 651 1 4 bp Feature: gene Location: 165320-166360 bp Feature: domain Description: PRK13927 Location: 165338-166325 bp Feature: domain Description: PRK1 3927 Location: 1 65338-1 66325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), PRK00024 (DNA repair protein RadC), PRK13927 (rod shape-determining protein MreB; Provisional)

Seq: QGTD01000005.1 Gracilibacillus dipsosauri strain DD1 NODE_2_length_564723_cov_70.986951, whole genome shotgun sequence (564723 bp)
Overview 1 RT 1: 309399-315053 bp Neighborhood of RT #1 [309399, 315073] KOG2230 RVT-GII GIIM group_II_RT_mat HTH_LacI PBP1_LacI_like_1 Feature: gene Location: 309399-311858 bp Feature: domain Description: KOG2230 Location: 309411-311745 bp Feature: domain Description: KOG2 2 30 Location: 309411-311745 bp Feature: gene Location: 311993-312190 bp Feature: gene Location: 312192-313115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312198-312657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 198-312 657 bp Feature: domain Description: GIIM Note: maturase Location: 312717-312930 bp Feature: domain Description: GIIM Note: maturase Location: 312 717-312 930 bp Feature: gene Location: 313180-313539 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 313285-313465 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3132 85-313465 bp Feature: gene Location: 314036-315073 bp Feature: domain Description: HTH_LacI Location: 314087-314237 bp Feature: domain Description: HTH_LacI Location: 314087-3142 37 bp Feature: domain Description: PBP1_LacI_like_1 Location: 314255-315053 bp Feature: domain Description: PBP1_LacI_like_1 Location: 3142 55-315053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2230 (KOG2230, Predicted beta-mannosidase ), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), HTH_LacI (cd01392), PBP1_LacI_like_1

Seq: QGTD01000001.1 Gracilibacillus dipsosauri strain DD1 NODE_8_length_224219_cov_73.125108, whole genome shotgun sequence (224219 bp)
Overview 1 RT 1: 113118-119835 bp Neighborhood of RT #1 [113118, 119945] AzgA PRK13914 LysM PRK13914 PRK13914 RVT-GII GIIM PRK01766 AcrR Feature: gene Location: 113118-114401 bp Feature: domain Description: AzgA Location: 113127-114387 bp Feature: domain Description: AzgA Location: 113 127-1143 87 bp Feature: gene Location: 114596-115669 bp Feature: domain Description: PRK13914 Location: 114608-114833 bp Feature: domain Description: PRK13 914 Location: 114608-11483 3 bp Feature: domain Description: LysM Location: 114887-115013 bp Feature: domain Description: LysM Location: 114887-115013 bp Feature: domain Description: PRK13914 Location: 115094-115238 bp Feature: domain Description: PRK13 914 Location: 115094-11523 8 bp Feature: domain Description: PRK13914 Location: 115250-115661 bp Feature: domain Description: PRK13 914 Location: 115250-115661 bp Feature: gene Location: 116149-117537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116464-117079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116464-117079 bp Feature: domain Description: GIIM Note: maturase Location: 117139-117352 bp Feature: domain Description: GIIM Note: maturase Location: 11713 9-1173 52 bp Feature: gene Location: 117982-119340 bp Feature: domain Description: PRK01766 Location: 117991-119329 bp Feature: domain Description: PRK01766 Location: 117991-1193 29 bp Feature: gene Location: 119352-119945 bp Feature: domain Description: AcrR Location: 119376-119835 bp Feature: domain Description: AcrR Location: 1193 76-11983 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AzgA (COG2252), PRK13914 (invasion associated endopeptidase), LysM (smart00257), RVT-GII, GIIM (pfam08388), PRK01766 (multidrug efflux protein; Reviewed), AcrR (COG1309)