myRT

myRT report for GCA_003182155.1_ASM318215v1

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Seq: QGTG01000001.1 Chitinophaga sp. S165 Ga0215878_101, whole genome shotgun sequence (2192680 bp)
Overview 1 RT 1: 574497-581612 bp Neighborhood of RT #1 [574497, 584230] TMAO_torS RVT-Retrons WGR_DNA_ligase HEAT_2 Feature: gene Location: 574497-576293 bp Feature: domain Description: TMAO_torS Location: 575163-576276 bp Feature: domain Description: TMAO_torS Location: 5751 63-576276 bp Feature: gene Location: 576955-577317 bp Feature: gene Location: 577413-578915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 577956-578574 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 577956-578574 bp Feature: gene Location: 579358-581016 bp Feature: gene Location: 581027-584230 bp Feature: domain Description: WGR_DNA_ligase Location: 581042-581267 bp Feature: domain Description: WGR_DNA_ligase Location: 581 042-581 267 bp Feature: domain Description: HEAT_2 Location: 581402-581612 bp Feature: domain Description: HEAT_2 Location: 581 402-581 61 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TMAO_torS (TIGR02956), RVT-Retrons, WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646)

Seq: QGTG01000007.1 Chitinophaga sp. S165 Ga0215878_107, whole genome shotgun sequence (417947 bp)
Overview 1 RT 1: 10384-17651 bp Neighborhood of RT #1 [10384, 17740] DDE_Tnp_IS66 TnpB_IS66 RVT-GII Intron_maturas2 HNHc DAP2 Feature: gene Location: 10384-11403 bp Feature: domain Description: DDE_Tnp_IS66 Location: 10903-11338 bp Feature: domain Description: DDE_Tnp_IS66 Location: 10903-11338 bp Feature: gene Location: 11465-11734 bp Feature: domain Description: TnpB_IS66 Location: 11468-11621 bp Feature: domain Description: TnpB_IS66 Location: 11468-1162 1 bp Feature: gene Location: 12080-13888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12344-13163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 344-13163 bp Feature: domain Description: Intron_maturas2 Location: 13235-13589 bp Feature: domain Description: Intron_maturas2 Location: 132 35-13589 bp Feature: domain Description: HNHc Note: nucleases Location: 13718-13868 bp Feature: domain Description: HNHc Note: nucleases Location: 13718-13868 bp Feature: gene Location: 14414-14842 bp Feature: gene Location: 15152-17740 bp Feature: domain Description: DAP2 Location: 16790-17651 bp Feature: domain Description: DAP2 Location: 16790-17651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DAP2 (COG1506)

Seq: QGTG01000019.1 Chitinophaga sp. S165 Ga0215878_119, whole genome shotgun sequence (25574 bp)
Overview 1 RT 1: 3-2771 bp 2 RT 2: 8707-13555 bp Neighborhood of RT #1 [3, 2968] LytTR RVT-Retrons Hpt1 Neighborhood of RT #2 [8707, 13707] Mrr_cat RVT-GII GIIM SusD Feature: gene Location: 3-308 bp Feature: domain Description: LytTR Location: 90-291 bp Feature: domain Description: LytTR Location: 90-291 bp Feature: gene Location: 330-566 bp Feature: gene Location: 568-1650 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 835-1387 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83 5-13 87 bp Feature: gene Location: 1804-2127 bp Feature: gene Location: 2129-2968 bp Feature: domain Description: Hpt1 Location: 2567-2771 bp Feature: domain Description: Hpt1 Location: 2567-2771 bp Feature: gene Location: 8707-8967 bp Feature: gene Location: 9040-10092 bp Feature: domain Description: Mrr_cat Location: 9652-10048 bp Feature: domain Description: Mrr_cat Location: 9652-10048 bp Feature: gene Location: 10728-11486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10956-11478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10956-11478 bp Feature: gene Location: 11542-12027 bp Feature: domain Description: GIIM Note: maturase Location: 11629-11848 bp Feature: domain Description: GIIM Note: maturase Location: 11629-11848 bp Feature: gene Location: 12304-13707 bp Feature: domain Description: SusD Location: 12574-13555 bp Feature: domain Description: SusD Location: 12574-13 555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LytTR (smart00850), RVT-Retrons, Hpt1 (COG2236), Mrr_cat (pfam04471), RVT-GII, GIIM (pfam08388), SusD (NF033071)

Seq: QGTG01000020.1 Chitinophaga sp. S165 Ga0215878_120, whole genome shotgun sequence (23380 bp)
Overview 1 RT 1: 19828-23246 bp Neighborhood of RT #1 [19828, 23269] RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 19828-20025 bp Feature: gene Location: 20402-20653 bp Feature: gene Location: 20681-21913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20894-21554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20894 -21554 bp Feature: domain Description: GIIM Note: maturase Location: 21635-21824 bp Feature: domain Description: GIIM Note: maturase Location: 21635-21824 bp Feature: gene Location: 22034-23269 bp Feature: domain Description: DDE_Tnp_IS66 Location: 22274-23114 bp Feature: domain Description: DDE_Tnp_IS66 Location: 22274 -23114 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 23135-23246 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 23135-2324 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: QGTG01000022.1 Chitinophaga sp. S165 Ga0215878_122, whole genome shotgun sequence (4285 bp)
Overview 1 RT 1: 3-3626 bp Neighborhood of RT #1 [3, 3626] DDE_Tnp_ISL3 RVT-UG2 Feature: gene Location: 3-140 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 6-120 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 6-120 bp Feature: gene Location: 277-1374 bp Feature: gene Location: 1526-3124 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1820-2642 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1820-2642 bp Feature: gene Location: 3227-3448 bp Feature: gene Location: 3459-3626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), RVT-UG2