myRT

myRT report for GCA_003182535.1_ASM318253v1

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Seq: QGTZ01000022.1 Paenibacillus pabuli strain DB-3 Ga0227271_122, whole genome shotgun sequence (67114 bp)
Overview 1 RT 1: 60455-66667 bp Neighborhood of RT #1 [60455, 66667] Mrr_cat recD RVT-Retrons HTH_XRE Feature: gene Location: 60455-61291 bp Feature: gene Location: 62538-64832 bp Feature: domain Description: Mrr_cat Location: 62556-62850 bp Feature: domain Description: Mrr_cat Location: 62556-62850 bp Feature: domain Description: recD Location: 62952-63171 bp Feature: domain Description: recD Location: 62952-631 71 bp Feature: gene Location: 65010-65936 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65172-65712 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 651 72-6571 2 bp Feature: gene Location: 65911-66249 bp Feature: domain Description: HTH_XRE Location: 65938-66103 bp Feature: domain Description: HTH_XRE Location: 65938-661 03 bp Feature: gene Location: 66530-66667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), recD (TIGR01447), RVT-Retrons, HTH_XRE (smart00530)

Seq: QGTZ01000029.1 Paenibacillus pabuli strain DB-3 Ga0227271_129, whole genome shotgun sequence (5475 bp)
Overview 1 RT 1: 403-4702 bp Neighborhood of RT #1 [403, 5169] HEPN_Cthe2314 RVT-UG7 YjbM Feature: gene Location: 403-1164 bp Feature: domain Description: HEPN_Cthe2314 Location: 568-1129 bp Feature: domain Description: HEPN_Cthe2 314 Location: 568-112 9 bp Feature: gene Location: 1204-1392 bp Feature: gene Location: 1525-3111 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1930-2347 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1930-2 347 bp Feature: gene Location: 3279-3998 bp Feature: gene Location: 4057-5169 bp Feature: domain Description: YjbM Location: 4105-4702 bp Feature: domain Description: YjbM Location: 4105-4702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_Cthe2314 (pfam18730), RVT-UG7, YjbM (COG2357)

Seq: QGTZ01000031.1 Paenibacillus pabuli strain DB-3 Ga0227271_131, whole genome shotgun sequence (1937 bp)
Overview 1 RT 1: 1-1771 bp Neighborhood of RT #1 [1, 1833] RVT-GII GIIM Feature: gene Location: 1-171 bp Feature: gene Location: 241-390 bp Feature: gene Location: 541-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841-1474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841-1474 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1771 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)