myRT

myRT report for GCA_003184005.1_ASM318400v1

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Seq: QHHD01000030.1 Klebsiella pneumoniae strain GML-KP5-Col_R-TR NODE_30_length_61484_cov_8.829519, whole genome shotgun sequence (61484 bp)
Overview 1 RT 1: 3-4175 bp Neighborhood of RT #1 [3, 4175] RVT-Retrons AAA_15 Feature: gene Location: 3-596 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183-597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 83-597 bp Feature: gene Location: 711-2957 bp Feature: domain Description: AAA_15 Location: 714-1722 bp Feature: domain Description: AAA_1 5 Location: 71 4-1 722 bp Feature: gene Location: 3870-4175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AAA_15 (pfam13175)

Seq: QHHD01000041.1 Klebsiella pneumoniae strain GML-KP5-Col_R-TR NODE_41_length_36437_cov_10.743216, whole genome shotgun sequence (36437 bp)
Overview 1 RT 1: 7954-11028 bp Neighborhood of RT #1 [7954, 11033] PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 7954-8172 bp Feature: domain Description: PRK09678 Location: 7957-8155 bp Feature: domain Description: PRK09678 Location: 7957-8155 bp Feature: gene Location: 8419-8607 bp Feature: gene Location: 9050-9349 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 9053-9164 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 9053-9164 bp Feature: gene Location: 9964-10446 bp Feature: domain Description: SmpB Location: 9994-10438 bp Feature: domain Description: SmpB Location: 9994-10438 bp Feature: gene Location: 10557-11033 bp Feature: domain Description: PRK10724 Location: 10563-11028 bp Feature: domain Description: PRK1072 4 Location: 10563-1102 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: QHHD01000058.1 Klebsiella pneumoniae strain GML-KP5-Col_R-TR NODE_58_length_13721_cov_24.636984, whole genome shotgun sequence (13721 bp)
Overview 1 RT 1: 5864-10886 bp Neighborhood of RT #1 [5864, 10894] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 5864-6829 bp Feature: domain Description: ArdC Location: 5990-6824 bp Feature: domain Description: ArdC Location: 5990-6824 bp Feature: gene Location: 6961-7230 bp Feature: gene Location: 7299-8786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7704-8394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7704-83 94 bp Feature: gene Location: 8940-9623 bp Feature: domain Description: PRK10276 Location: 9243-9606 bp Feature: domain Description: PRK10276 Location: 9243 -9606 bp Feature: gene Location: 9623-10894 bp Feature: domain Description: umuC Location: 9626-10886 bp Feature: domain Description: umuC Location: 9626-10886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: QHHD01000065.1 Klebsiella pneumoniae strain GML-KP5-Col_R-TR NODE_65_length_9267_cov_21.356675, whole genome shotgun sequence (9267 bp)
Overview 1 RT 1: 3799-8170 bp Neighborhood of RT #1 [3799, 8286] InsE PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 3799-4101 bp Feature: domain Description: InsE Location: 3808-4090 bp Feature: domain Description: InsE Location: 3808-4 090 bp Feature: gene Location: 4128-4553 bp Feature: domain Description: PHA02517 Location: 4152-4488 bp Feature: domain Description: PHA02517 Location: 4 152-4 4 88 bp Feature: gene Location: 5145-6668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5418-6150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 18-6150 bp Feature: domain Description: GIIM Note: maturase Location: 6225-6423 bp Feature: domain Description: GIIM Note: maturase Location: 6225-64 23 bp Feature: gene Location: 6833-6991 bp Feature: domain Description: PHA02517 Location: 6836-6956 bp Feature: domain Description: PHA02517 Location: 6836-6956 bp Feature: gene Location: 7210-8286 bp Feature: domain Description: COG3547 Location: 7249-8170 bp Feature: domain Description: COG354 7 Location: 724 9-8170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )