myRT

myRT report for GCA_003184135.1_ASM318413v1

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Seq: QHJD01000017.1 Pseudomonas sp. RW405 NODE_41_LENGTH_4706803_COV_66.390709, whole genome shotgun sequence (4706891 bp)
Overview 1 RT 1: 2725048-2728084 bp 2 RT 2: 3266191-3272075 bp 3 RT 3: 3781477-3788841 bp Neighborhood of RT #1 [2725048, 2728084] MvaT_DBD RVT-GII GIIM ArdC Neighborhood of RT #2 [3266191, 3272131] fmt def RVT_N RVT-GII YkfC HNH PilM PilN Neighborhood of RT #3 [3781477, 3788843] MrcA RVT_N RVT-GII YkfC HNH Smf SUA5 Feature: gene Location: 2725048-2725413 bp Feature: domain Description: MvaT_DBD Location: 2725288-2725408 bp Feature: domain Description: MvaT_DBD Location: 2725288-2725408 bp Feature: gene Location: 2725435-2725596 bp Feature: gene Location: 2725876-2726655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2725888-2726206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2725888-2726206 bp Feature: domain Description: GIIM Note: maturase Location: 2726263-2726488 bp Feature: domain Description: GIIM Note: maturase Location: 2726263-2726488 bp Feature: gene Location: 2726737-2727675 bp Feature: domain Description: ArdC Location: 2726743-2727652 bp Feature: domain Description: ArdC Location: 2726743-2727652 bp Feature: gene Location: 2727761-2728084 bp Feature: gene Location: 3266191-3267123 bp Feature: domain Description: fmt Location: 3266194-3267091 bp Feature: domain Description: fmt Location: 32661 94-3267091 bp Feature: gene Location: 3267184-3267690 bp Feature: domain Description: def Location: 3267187-3267673 bp Feature: domain Description: def Location: 32671 87-3267673 bp Feature: gene Location: 3267798-3269504 bp Feature: RT Description: RVT_N Location: 3267855-3268098 bp Feature: RT Description: RVT_N Location: 3267855-3268098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3268143-3268776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32681 43-3268776 bp Feature: domain Description: YkfC Location: 3268977-3269139 bp Feature: domain Description: YkfC Location: 3268977-32691 39 bp Feature: domain Description: HNH Note: nucleases Location: 3269316-3269454 bp Feature: domain Description: HNH Note: nucleases Location: 326931 6-3269454 bp Feature: gene Location: 3270717-3271598 bp Feature: domain Description: PilM Location: 3270720-3271251 bp Feature: domain Description: PilM Location: 3270720-3271 251 bp Feature: gene Location: 3271595-3272131 bp Feature: domain Description: PilN Location: 3271598-3272075 bp Feature: domain Description: PilN Location: 3271 598-3272075 bp Feature: gene Location: 3781477-3781608 bp Feature: gene Location: 3781624-3784152 bp Feature: domain Description: MrcA Location: 3781705-3784081 bp Feature: domain Description: MrcA Location: 3781 705-3784081 bp Feature: gene Location: 3784206-3785912 bp Feature: RT Description: RVT_N Location: 3784263-3784506 bp Feature: RT Description: RVT_N Location: 3784263-3784506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3784551-3785187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3784551 -37851 87 bp Feature: domain Description: YkfC Location: 3785385-3785541 bp Feature: domain Description: YkfC Location: 3785385-3785541 bp Feature: domain Description: HNH Note: nucleases Location: 3785724-3785862 bp Feature: domain Description: HNH Note: nucleases Location: 3785724-3785862 bp Feature: gene Location: 3787146-3788243 bp Feature: domain Description: Smf Location: 3787185-3788235 bp Feature: domain Description: Smf Location: 37871 85-3788235 bp Feature: gene Location: 3788286-3788843 bp Feature: domain Description: SUA5 Location: 3788304-3788841 bp Feature: domain Description: SUA5 Location: 3788304-3788841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MvaT_DBD (cl40688), RVT-GII, GIIM (pfam08388), ArdC (COG4227), fmt (TIGR00460), def (PRK00150), RVT_N (pfam13655), YkfC (COG3344), HNH (pfam01844), PilM (pfam07419)
PilN (pfam05137), MrcA (COG5009), Smf (COG0758), SUA5 (pfam03481)

Seq: QHJD01000025.1 Pseudomonas sp. RW405 NODE_63_LENGTH_800_COV_95.657501, whole genome shotgun sequence (888 bp)
Overview 1 RT 1: 306-888 bp Neighborhood of RT #1 [306, 887] RVT_N RVT-GII Feature: gene Location: 306-887 bp Feature: RT Description: RVT_N Location: 363-606 bp Feature: RT Description: RVT_N Location: 363-606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651-888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651-888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: QHJD01000030.1 Pseudomonas sp. RW405 NODE_81_LENGTH_800_COV_102.309998, whole genome shotgun sequence (888 bp)
Overview 1 RT 1: 2-584 bp Neighborhood of RT #1 [2, 583] RVT_N RVT-GII Feature: gene Location: 2-583 bp Feature: RT Description: RVT_N Location: 59-302 bp Feature: RT Description: RVT_N Location: 59-3 02 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 47-584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII