myRT

myRT report for GCA_003186665.1_ASM318666v1

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Seq: QHMK01000013.1 Escherichia coli strain PEC-NDM NODE_13_length_114751_cov_24.8085_pilon_NDM, whole genome shotgun sequence (114751 bp)
Overview 1 RT 1: 93069-97360 bp Neighborhood of RT #1 [93069, 97360] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 93069-94331 bp Feature: domain Description: YesM Location: 93582-94323 bp Feature: domain Description: YesM Location: 93582-94323 bp Feature: gene Location: 94361-94531 bp Feature: gene Location: 94881-95402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94887-95169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94887-951 69 bp Feature: domain Description: GIIM Note: maturase Location: 95217-95397 bp Feature: domain Description: GIIM Note: maturase Location: 9521 7-95397 bp Feature: gene Location: 95430-95969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95760-95838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95760-95838 bp Feature: gene Location: 96000-96197 bp Feature: gene Location: 96455-97360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: QHMK01000022.1 Escherichia coli strain PEC-NDM NODE_22_length_69079_cov_23.4072_pilon_NDM, whole genome shotgun sequence (69079 bp)
Overview 1 RT 1: 64693-69077 bp Neighborhood of RT #1 [64693, 69077] COG4688 COG4688 RVT-UG3 Feature: gene Location: 64693-66726 bp Feature: domain Description: COG4688 Location: 64696-65602 bp Feature: domain Description: COG4688 Location: 64696-65602 bp Feature: domain Description: COG4688 Location: 65977-66700 bp Feature: domain Description: COG4688 Location: 65977-66700 bp Feature: gene Location: 66719-67138 bp Feature: gene Location: 67190-68539 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 67646-68123 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 67646-6812 3 bp Feature: gene Location: 68532-69077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4688 (Uncharacterized protein ), RVT-UG3

Seq: QHMK01000027.1 Escherichia coli strain PEC-NDM NODE_27_length_55139_cov_21.8564_pilon_NDM, whole genome shotgun sequence (55139 bp)
Overview 1 RT 1: 41007-42808 bp Neighborhood of RT #1 [41007, 42808] RVT-GII Feature: gene Location: 41007-41267 bp Feature: gene Location: 41282-41431 bp Feature: gene Location: 41629-42306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41743-42295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41743 -42295 bp Feature: gene Location: 42293-42601 bp Feature: gene Location: 42635-42808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QHMK01000081.1 Escherichia coli strain PEC-NDM NODE_81_length_7107_cov_18.7394_pilon_Genepoc-NDM, whole genome shotgun sequence (7107 bp)
Overview 1 RT 1: 1702-6122 bp Neighborhood of RT #1 [1702, 7105] BRR2 BRR2 RVT-UG8 Feature: gene Location: 1702-4857 bp Feature: domain Description: BRR2 Location: 2425-3001 bp Feature: domain Description: BRR2 Location: 24 25-3001 bp Feature: domain Description: BRR2 Location: 3436-3682 bp Feature: domain Description: BRR2 Location: 34 36-3682 bp Feature: gene Location: 4995-5177 bp Feature: gene Location: 5585-7105 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5675-6122 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5675-6122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BRR2 (COG1204), RVT-UG8