myRT

myRT report for GCA_003194265.1_ASM319426v1

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Seq: CP023258.1 Escherichia coli strain CCUG 70745 chromosome (5074278 bp)
Overview 1 RT 1: 90580-96569 bp 2 RT 2: 2247046-2251452 bp 3 RT 3: 3407091-3410146 bp 4 RT 4: 4184852-4188734 bp Neighborhood of RT #1 [90580, 96571] Peptidase_S74 RVT-Retrons TIR_2 PRK10597 prfC Neighborhood of RT #2 [2247046, 2251463] InsE PHA02517 RVT-GII GIIM PHA02517 Tra8 Neighborhood of RT #3 [3407091, 3410146] RVT-GII RVT-GII GIIM Neighborhood of RT #4 [4184852, 4188739] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 90580-91620 bp Feature: domain Description: Peptidase_S74 Location: 91261-91408 bp Feature: domain Description: Peptidase_S74 Location: 91 261 -91 408 bp Feature: gene Location: 91663-91956 bp Feature: gene Location: 92541-94145 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 92832-93423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 92832-93423 bp Feature: domain Description: TIR_2 Location: 93750-94038 bp Feature: domain Description: TIR_2 Location: 93750-94038 bp Feature: gene Location: 94505-94765 bp Feature: domain Description: PRK10597 Location: 94508-94748 bp Feature: domain Description: PRK1 0597 Location: 94508-94748 bp Feature: gene Location: 94985-96571 bp Feature: domain Description: prfC Location: 95003-96569 bp Feature: domain Description: prfC Location: 95003-96569 bp Feature: gene Location: 2247046-2247348 bp Feature: domain Description: InsE Location: 2247055-2247337 bp Feature: domain Description: InsE Location: 2247055-2247337 bp Feature: gene Location: 2247375-2247800 bp Feature: domain Description: PHA02517 Location: 2247399-2247735 bp Feature: domain Description: PHA0251 7 Location: 2247399-2247735 bp Feature: gene Location: 2248392-2249915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2248665-2249397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2248665-2249397 bp Feature: domain Description: GIIM Note: maturase Location: 2249472-2249670 bp Feature: domain Description: GIIM Note: maturase Location: 2249472-2249670 bp Feature: gene Location: 2250080-2250463 bp Feature: domain Description: PHA02517 Location: 2250083-2250458 bp Feature: domain Description: PHA0251 7 Location: 2250083-2250458 bp Feature: gene Location: 2250534-2251463 bp Feature: domain Description: Tra8 Location: 2250537-2251452 bp Feature: domain Description: Tra8 Location: 2250537-2251 452 bp Feature: gene Location: 3407091-3407996 bp Feature: gene Location: 3408134-3408325 bp Feature: gene Location: 3408482-3409021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3408812-3408890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340881 2-3408890 bp Feature: gene Location: 3409049-3409570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3409055-3409337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3409055-3409337 bp Feature: domain Description: GIIM Note: maturase Location: 3409385-3409565 bp Feature: domain Description: GIIM Note: maturase Location: 3409385-3409565 bp Feature: gene Location: 3409669-3409848 bp Feature: gene Location: 3409958-3410146 bp Feature: gene Location: 4184852-4185310 bp Feature: domain Description: dut Location: 4184858-4185305 bp Feature: domain Description: dut Location: 41 84858-41 85305 bp Feature: gene Location: 4185417-4186013 bp Feature: domain Description: slmA Location: 4185423-4185999 bp Feature: domain Description: slmA Location: 41 85423-41 85999 bp Feature: gene Location: 4186059-4187018 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4186194-4186743 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 861 94-41 86743 bp Feature: gene Location: 4187316-4187972 bp Feature: domain Description: pyrE Location: 4187334-4187967 bp Feature: domain Description: pyrE Location: 41 87334-41 87967 bp Feature: gene Location: 4188023-4188739 bp Feature: domain Description: rph Location: 4188026-4188734 bp Feature: domain Description: rph Location: 41 88026-41 88734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S74 (pfam13884), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Tra8 (COG2826)
dut (TIGR00576), slmA (PRK09480), pyrE (TIGR00336), rph (PRK00173)