myRT

myRT report for GCA_003194715.1_ASM319471v1

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Seq: QITH01000149.1 Escherichia coli strain 16VS LRAT_59_S59_L001_R1_001__paired__cotig_149, whole genome shotgun sequence (1981 bp)
Overview 1 RT 1: 18-1791 bp Neighborhood of RT #1 [18, 1791] IS285 RVT-GII Feature: gene Location: 18-776 bp Feature: domain Description: IS285 Location: 48-738 bp Feature: domain Description: IS285 Location: 48-738 bp Feature: gene Location: 825-1118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 996-1104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 996-1 1 04 bp Feature: gene Location: 1179-1400 bp Feature: gene Location: 1543-1791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII

Seq: QITH01000008.1 Escherichia coli strain 16VS LRAT_59_S59_L001_R1_001__paired__cotig_8, whole genome shotgun sequence (98561 bp)
Overview 1 RT 1: 84890-88772 bp Neighborhood of RT #1 [84890, 88777] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 84890-85606 bp Feature: domain Description: rph Location: 84893-85601 bp Feature: domain Description: rph Location: 84893-85601 bp Feature: gene Location: 85657-86313 bp Feature: domain Description: pyrE Location: 85675-86308 bp Feature: domain Description: pyrE Location: 85675-86308 bp Feature: gene Location: 86611-87570 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86746-87295 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86746-872 95 bp Feature: gene Location: 87616-88212 bp Feature: domain Description: slmA Location: 87622-88198 bp Feature: domain Description: slmA Location: 8762 2 -88198 bp Feature: gene Location: 88319-88777 bp Feature: domain Description: dut Location: 88325-88772 bp Feature: domain Description: dut Location: 8832 5-88772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: QITH01000099.1 Escherichia coli strain 16VS LRAT_59_S59_L001_R1_001__paired__cotig_99, whole genome shotgun sequence (34178 bp)
Overview 1 RT 1: 3362-7494 bp Neighborhood of RT #1 [3362, 7494] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3362-3595 bp Feature: domain Description: DUF905 Location: 3392-3590 bp Feature: domain Description: DUF905 Location: 3 3 92-3 590 bp Feature: gene Location: 3658-4110 bp Feature: domain Description: PRK13732 Location: 3664-4108 bp Feature: domain Description: PRK13 73 2 Location: 3 664-4108 bp Feature: gene Location: 4305-6206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4572-5403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4572-5403 bp Feature: domain Description: Intron_maturas2 Location: 5517-5775 bp Feature: domain Description: Intron_maturas2 Location: 5517-5775 bp Feature: domain Description: HNHc Note: nucleases Location: 5949-6111 bp Feature: domain Description: HNHc Note: nucleases Location: 5949-6111 bp Feature: gene Location: 6948-7151 bp Feature: gene Location: 7228-7494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)